Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01282 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAACTTCTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCCACTGGGTTGAATGAGTTACTCCCCAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGGTTTAGCCACTTTCAGCCCCTCGTTTGCTGCATTTTCAACACCACTAGACCAAAGATTTGAATGTCCCTATGGAAGTGAAGCAGCGTACCCTTTTGTTGACGGGTTCACATTGCCGGAGCTTGATTCATCATACACCAGAAATGATGAGTCAGCACCACTTCTGCCACAAGAAGATAACCCATCATTGGAGGATGAAGAGCTTGGCTTTCTGGGAAGTGATAACCAGAGTTTGGAACAAGCAAAAAATGGCTGCAAAATTGAGGAGCAAGTGACAGAGATTCCAGTCTTCAACATGGGTTTGTGTGCAGAGAAAAAGCCCAAATCCAAAAAGCTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGACACGATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCAGATAAACCTTTTGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCTAAGTTTGATGTTGAGAGAAGAGAGCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAACCAGGATTACTACTGTCCACAGTGAACACCCTAGAAGCATTGGGCCTTGAGATTCACCAGTGTGTCATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGCAGCTGAGCAGAGAAATTGTATGAGCCCGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGCGATGTCTGTAG 996 0.4408 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSGWSFDSFDENQGLATFSPSFAAFSTPLDQRFECPYGSEAAYPFVDGFTLPELDSSYTRNDESAPLLPQEDNPSLEDEELGFLGSDNQSLEQAKNGCKIEEQVTEIPVFNMGLCAEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNQINLLGISKELKPNEVMVRNSPKFDVERREQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEAAEQRNCMSPEEIKQALFRNAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01282 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 78 325 - -
Spst2g01282 331 CDD ACT_UUR-ACR-like 257 298 - -
Spst2g01282 331 Gene3D - 150 223 IPR036638 GO:0046983
Spst2g01282 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Spst2g01282 331 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Spst2g01282 331 SMART finulus 164 213 IPR011598 GO:0046983
Spst2g01282 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01282 Spst-Chr2 11431379 11432794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01282 149 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 70.492 4.10e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01282 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01282 - - gmx:100806571 620.928