Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01270 ATGTCGCCGCCGGCGGTGGTAACGGAGGAGGACGGTCTGAGCAAGGTGTCTTCGACCGTAGCGTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCTTCGACTGTGCCAGTCTTGTGTGTTGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGAGGCTAGGTCTTCCCGGGTCACAGTCACCTGAAAGGGATCCGGATCTGTTCTCTTTAAGCTTAGCAAAGCTTGATGAGAAGCCTCTGTTCCCTTTGGTTCCTACTAAAGATGGGATTTGCTTGTCGTCCCAGAAAACCGTTGTTTCCGGCAACAAGAGAGGTTTTGCTGATACCATGGATGGTTTTTCTCAGGGAAAGTTTACTGGTAATACAGGAATGAACGCAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCAATGAAAGAAATGCCAAGCAAGTTGCAAGAACGCCCTTGTTCGGACAATAATGGAACTGGTCATAACCATACAGGTGCTTCGATAAGTGGCAGTGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACCACCTCCAACAAGAACAATGATGAAGTAGATGGAAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACATATCAAGAACTATCTTCTGCACTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAGTGTGGTTCTCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGATCTTCTGCATGGTTCAGAGTATGTTCTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCGTGGGAAATGTTCACTGACACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1074 0.4655 MSPPAVVTEEDGLSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPVLCVEKKENMNLKATELRLGLPGSQSPERDPDLFSLSLAKLDEKPLFPLVPTKDGICLSSQKTVVSGNKRGFADTMDGFSQGKFTGNTGMNAMLSPRPSGAQPSAMKEMPSKLQERPCSDNNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01270 357 Gene3D - 233 351 - -
Spst2g01270 357 FunFam Auxin-responsive protein 232 349 - -
Spst2g01270 357 SUPERFAMILY CAD & PB1 domains 236 338 - -
Spst2g01270 357 MobiDBLite consensus disorder prediction 175 199 - -
Spst2g01270 357 MobiDBLite consensus disorder prediction 214 228 - -
Spst2g01270 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 344 IPR003311 GO:0005634|GO:0006355
Spst2g01270 357 MobiDBLite consensus disorder prediction 155 232 - -
Spst2g01270 357 Pfam AUX/IAA family 75 348 IPR033389 -
Spst2g01270 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01270 Spst-Chr2 11270165 11273357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01270 241 347 B3 DNA Binding Superfamily AT4G23980 29.907 9.10e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst2g01270 AUX_IAA 2.2e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01270 K14484 - gmx:547502 672.93