Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01257 ATGAATCTCTGGACGGACGATAATTCCTCAGTCATGGAGGCTTTCATGTCGTCCTCCGATCTCTCTTCCATATGGCCCCCGCCGGCGCCGCCGCAGTCCGCCGCGGTCTTCAACCAGGACACGCTCCAGCACCGCCTCCAGGCCCTCATCGAGGGCGCCAGGGAGAACTGGACCTACGCTATCTTTTGGCAGTCCTCCTACGACTATTCCGGCTCCACGCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGACGACGACAAGGCCAAGGCCAAGGCCAAAGCCAAAGCCAAAGCTACCTCAGCCGCAGAGCAGGACCACCGCAAAAAGGTCCTCCGCGAGCTCAACTCCCTTATCTCCGGTTCCTCCTCCGCCGCCTCTGACGACGTCGACGAGGAGGTCACTGACACCGAGTGGTTCTTCCTCGTCTCCATGACCCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGCCAGGCCTTCTTCAACTCCAACCCCGTCTGGGTCACCGGCGCCGACCGTCTCTCCGCCTCCCCCTGCGAGAGAGCCCGCCAGGGACAAGTATTCAGCCTCCAAACCCTAGTCTGCATACCCTCGGCGAACGGCGTCGTAGAGCTGGGGTCCACCGAGTTAATTTACCAGAACTCGGATCTGATGAACAAGGTCAAGGTTCTCTTCAATTTTAACAACAACTTCGACATGGGTTCTTCTTGGCCTGCTACTAGCGCCGATCAAGGAGAAAACGACCCGTCCTCGCTTTGGCTGAACGATCCTGAAGTTAGGGATTCCATTAACACTGTCGCAGCTACCCCTTCTGTTTCCGTTTCGGTTCCCCCTCATAACAGTACTCACGGGATTTCAAAGACGATGCAGTTGGAGAGTTCTATTCAAACCCCGGGTTCCAGTACCCTAACTGAAACCCCAAGCTCTATGCACGCTATTCCGCAGAACCAGAGCGTGTTCTCTAGAGAATTGAACTTCTCTGAGTACGGTTTTGACCCCAAGAGTGGCAACAATCACAATCAGCATTCCCTGAAGCCTGAATCCTGCGAGATTCTCAGCTTCAGCGAGAGCAAGAGAACTTCTTACGGCGGCGGCGGCGGCGTCAATGGAAATTCCAATTCCAATTCCAATTTTTTCTCCGGTCAATCAACGTTTGTTGCTGTTGCGGATGACAACAACAATAACAACAACAACAACGGGAAGAGACGGTCGCCGAATTCACGAGGCAGCAACGATGACGGAATGCTTTCGTTCACCTCCCGCGCGATTCTTCCGGCCACGAATTTGAAGTCTGGCGGCGGCGGCGATTCCGACCACTCGGATCTGGAAGCGTCGGTGGTGAAAGACCCTGTGGTGGAGCCGGAGAAGCGGCCTAGGAAGAGAGGGCGGAAGCCAGCAAACGGAAGAGAGGAACCGTTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAATCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCCAAGATGGACAAAGCGTCGCTTCTGGGCGACGCCATATCTTACATCACGGAGCTGAAGTCCAAACTTCAAACCCTGGAATCAGATAAAGATGGTTTGCAGAAGCAACTTGAAGGAGTGAAAAAGGAACTCGAGAAATCAAACGACAACATTTCTTCTAATCATACTAAGCACGCGGGTAATAGTAACATTAAGTCGTCGAATCAGGCGTTGATTGATTTGGACATCGACGTGAAGATTATTGGGTGGGACGCGATGATAAGGATTCAATGCAGCAAGAAGAACCACCCGGCGGCGAGGTTGATGGCGGCGTTGATGGAGTTGGATTTGGATGTGCACCACGCCAGCGTGTCGGTGGTGAACGAGTTGATGATCCAACAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTGCGGCCCTGTCGGCTAAGGTTGGGGATGTACGATGA 1965 0.5461 MNLWTDDNSSVMEAFMSSSDLSSIWPPPAPPQSAAVFNQDTLQHRLQALIEGARENWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSSAASDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVTGADRLSASPCERARQGQVFSLQTLVCIPSANGVVELGSTELIYQNSDLMNKVKVLFNFNNNFDMGSSWPATSADQGENDPSSLWLNDPEVRDSINTVAATPSVSVSVPPHNSTHGISKTMQLESSIQTPGSSTLTETPSSMHAIPQNQSVFSRELNFSEYGFDPKSGNNHNQHSLKPESCEILSFSESKRTSYGGGGGVNGNSNSNSNFFSGQSTFVAVADDNNNNNNNNGKRRSPNSRGSNDDGMLSFTSRAILPATNLKSGGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLQKQLEGVKKELEKSNDNISSNHTKHAGNSNIKSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNELMIQQATVKMGSRFYTQEQLRAALSAKVGDVR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01257 654 MobiDBLite consensus disorder prediction 544 563 - -
Spst2g01257 654 MobiDBLite consensus disorder prediction 271 310 - -
Spst2g01257 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 225 IPR025610 -
Spst2g01257 654 PANTHER MYC 12 649 IPR045084 GO:0003700|GO:0006355
Spst2g01257 654 Coils Coil 516 554 - -
Spst2g01257 654 MobiDBLite consensus disorder prediction 441 480 - -
Spst2g01257 654 CDD bHLH_AtAIB_like 467 543 - -
Spst2g01257 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Spst2g01257 654 SMART finulus 476 525 IPR011598 GO:0046983
Spst2g01257 654 MobiDBLite consensus disorder prediction 388 426 - -
Spst2g01257 654 FunFam Transcription factor bHLH13 463 537 - -
Spst2g01257 654 MobiDBLite consensus disorder prediction 388 480 - -
Spst2g01257 654 Gene3D - 462 551 IPR036638 GO:0046983
Spst2g01257 654 Pfam Helix-loop-helix DNA-binding domain 474 519 IPR011598 GO:0046983
Spst2g01257 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 539 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01257 Spst-Chr2 11135644 11137608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01257 1 651 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.612 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01257 bHLH-MYC_N 1.1e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01257 K13422 - gmx:100790168 976.467