Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01241 ATGGCCTCTCTAGGTAACCCAAAAAGTTGGGTTCCATACATGAACAGCAAAGACTGCTCTCAAGGGCTTTGTAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCCGAGGATGATTCAAGTCCCAATTTCTCACCTCTAGTTATTGCTGTCATTGGAGTCTTGGCCAGTGCTTTTCTTCTTGTGACTTACTATACCTTAATATCCAAGTACTGTGGTAACAGAGAATCTTCCCAAAGCGAAGACAACGAAGAAAACGTTGAATTGGAAGAGGATCACAACCCTTCACTCCACGAGCCGTGGCATGCTCCAACCATTGGGTTAGATGAGGCTCTGATCAAGTCCATAACAGTTTGTAAGTACAAGAAAGGTGATGGGTTGGTGGAGGTCACAGATTGCCCCGTTTGTCTCAGCGAGTTTGACGATGATGAAAGTATTAGACTCTTACCTAAATGCAGCCATGCTTTTCATCTCCCTTGCATTGATACGTGGCTCAAATCTCACTCTAGTTGCCCTCTATGTCGTGCTAGCATATTCACTTTCAATGCTGCATCACTTTATGTGGCTACCCCAGTCGCAGAATTGGGCAGTGAAACTTCAGAAAACCAACATGCAGATGTAAATGATGTTGTTACTACAAGGGACAGTGATGTGGACGCTGTGGAAGGAGAAGTCACACATGGTGGAGCAGTTCCAAAGACAGCATTGCGTGCTTTGAGTGATCTAGGAAATTTGAGGGGAAGGCATAGTGTAATCGAGATTAGAGATGAAGACTATGATTCCATTAGAAGGACAGTTTCTATGGACCATTCATTTCAAAGGGGTAGTGGTCTTTCAGTGGCTGATGTCCTCCATGTGAATCAAGAGCATGAAGGATGTTCTAATGGGGCTGGTCCTTCTAAGGGATTAAGAAGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCTAGTGGAAGATTCTCCCTTAGCAGAAATGACAGAGGAAGGCAATGGGTTCTGCCAGTCTGA 1080 0.4398 MASLGNPKSWVPYMNSKDCSQGLCSLYCPQWCYVIYPPPPPFEFPEDDSSPNFSPLVIAVIGVLASAFLLVTYYTLISKYCGNRESSQSEDNEENVELEEDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLSEFDDDESIRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAASLYVATPVAELGSETSENQHADVNDVVTTRDSDVDAVEGEVTHGGAVPKTALRALSDLGNLRGRHSVIEIRDEDYDSIRRTVSMDHSFQRGSGLSVADVLHVNQEHEGCSNGAGPSKGLRSESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSLSRNDRGRQWVLPV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01241 359 MobiDBLite consensus disorder prediction 299 318 - -
Spst2g01241 359 FunFam RING-H2 finger protein ATL54 117 190 - -
Spst2g01241 359 SUPERFAMILY RING/U-box 122 189 - -
Spst2g01241 359 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Spst2g01241 359 PANTHER RING-H2 FINGER PROTEIN ATL16 41 325 IPR044600 GO:0016567|GO:0016740
Spst2g01241 359 MobiDBLite consensus disorder prediction 85 104 - -
Spst2g01241 359 CDD RING-H2_EL5-like 141 184 - -
Spst2g01241 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Spst2g01241 359 SMART ring_2 142 183 IPR001841 -
Spst2g01241 359 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01241 Spst-Chr2 10991340 10992419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01241 6 359 C3H Transcription Factor Family AT5G17600 42.400 3.55e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01241 - - gmx:100792267 628.246