Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01239 ATGCAAACAACCATCGATGTCTTCGTCAAAATCAAAGCAGATGACTCCCAAACGCCACCGCCACCGCCTCCAGCACCACCGGCGCAAATCACCCCATCCACGTTAATATTCTTCTCCATCGCAGTGGCCGTGTTCTGCTTCGTAGGTTTCATCGTGGTCTTCTTCTGCAGGTGCTGTTTCGTGAACATCTCGCGCACCAACACCGTCGTTCGCCTCTCTCCCATCGCTTCTCCCTACAGAGGCCTCGACCCTTCTCTTCTAAGCACGTTCCCCACGTTCCTCTACGCCACCGTGAAGGATCTCCGCAAGGAGAAGAAGTACTCCCTTGAATGCGCCATTTGCTTGGTGGAGTTCGACGACGACAGCATGCTGCGTCTCTTAACCGCGTGTTGCCACGTGTTCCACCAAGAGTGCATCGACCTGTGGCTCCGCTCGCACAAGACTTGCCCCTTTTGTCGCATGGATCTCGAGACAGCCAGTAACGCCGACATGCAGAAACCTCATGAGCAAAACGAGGAGAATGTGGAAGAAGAGAGAAGCGAGCACGTGTGCATTGACGTGAATGAAGGCCATGGAGATGCGGGACCCAATAGTTGTGGTGAGGGACACAATGATGGTGGTGAAGGAGGTTCGATGAGTGTGAGCATGCAGCGAGAGAAGTTTGCATCCACACGTTCACACTCGACTGGGCATTCCATAGTTCTAGTTAGAGAAGGAGATGAAGGAAGAGATTATGATAATGATGATAAATACACGCTGAGATTACCTGAACATGTGGCGATAAAAATTTTTAAAGGCCACAATTACTCCAAGAGTTGTTCCAGTTACAAAGACATGCCAAAGCCTTCTGGTGCACCTTGTAGTAATTGTGGTTATGTTCAAACTGTATCTCAAAGCTCCTCCAGTAATGCTATAAACAATGCTTAA 927 0.4973 MQTTIDVFVKIKADDSQTPPPPPPAPPAQITPSTLIFFSIAVAVFCFVGFIVVFFCRCCFVNISRTNTVVRLSPIASPYRGLDPSLLSTFPTFLYATVKDLRKEKKYSLECAICLVEFDDDSMLRLLTACCHVFHQECIDLWLRSHKTCPFCRMDLETASNADMQKPHEQNEENVEEERSEHVCIDVNEGHGDAGPNSCGEGHNDGGEGGSMSVSMQREKFASTRSHSTGHSIVLVREGDEGRDYDNDDKYTLRLPEHVAIKIFKGHNYSKSCSSYKDMPKPSGAPCSNCGYVQTVSQSSSSNAINNA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01239 308 PANTHER RING FINGER DOMAIN-CONTAINING 17 161 - -
Spst2g01239 308 SUPERFAMILY RING/U-box 104 158 - -
Spst2g01239 308 FunFam E3 ubiquitin-protein ligase ATL6 71 159 - -
Spst2g01239 308 Pfam Ring finger domain 110 153 IPR001841 -
Spst2g01239 308 MobiDBLite consensus disorder prediction 193 213 - -
Spst2g01239 308 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Spst2g01239 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 161 IPR013083 -
Spst2g01239 308 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01239 Spst-Chr2 10959264 10960190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01239 11 274 Rapid Response to Elicitors AT3G05200 35.075 2.77e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01239 - - vum:124842333 368.622