Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01234 ATGGGCAAGAAGAAACCTAAGGACCTGCAGCAAACCCCTCAAACCGATACCGTTTCAACCCCTTCCAGCATTTTCAGCAAGCTCTTCGGCAACGCGCCGGAACAGGCCACTGCAGCCAACCCCACAGGCGCCGCCTCTCTATTTTCCGATGACAACCCCTTTCGGAGAAAACCCGCACCACTTTCCGATACAACCAACCACTCTCACATCCCTTTCAACGGCGACGCCGAGAACCTCGATGTGGGCTACGAGAAGAAGCGGAAGAGGAACAAAGAAAAAAGCCCAGTCCTTGATTCTGTTTCAGTAACCAAAGTTTCAGAGAAATCAGAGAAGAAGAGGAAACGCGGTTTCGGTGAAGGAAGAGAAGGAGACCTTACTTTGGGTGCAGAAGCAATTGGGAAAAGGAAGCGAAAAAGGGACGATGTTGAGAGAGAGTGGGAGGAAAAGAGATATGGGGCGGTGGAGGAAGGTGAAAAGGGAGAGATTGAAAATAAAACTGTTGGGAGCAAGAGGAAGACGTTGGATGATCCAGCTGATACGATGGTTTCAAAGGAGGGATTTGATGACGAGGATAAGCTTTTGAGAACAGTTTTTGTTGGGAATTTGCCTCTTAAGGTTAAAAAGAAGACTCTGTTGAAGGAATTTAAGAAGTTTGGTGAGGTCGAGTCTGTGAGGATTCGTTCTGTTCCCGTACAAGATACTAAGAAACCTAGAAAGGGAGCTATCCTTGCGAAGAAAATTAATGATGCTGCTGATAGTGTGCACGCATACATTGTTTTCAAAACCGAAGAATCGGCACAGGCTTCTTTGTCACACAATATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGAGCATGCCCACCCCGCAAGAAACATAAAGGGGAAAGCGTTCCTCTTTATGACAATAAGCGAACTGTTTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAGGTTTATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTGTCGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTACGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAAAGGAGCTTGAAGCTTCGAGACAGAGAGTTGAGACTCACTCATGCCAAAGCAGATGTCACTCCATCTAAAAGGCCAAACCCATCATCAGCACAAGCTCCTACCCCTTCTAAGAGGCCAAACACATCATCAACACAAGCTCCTGGTACTCCTGCGAAGAAATTTTCTGTGGCTTCACGCTCTCCTTCAAGCAGTATTAACAGGTCAAACCGAAAAACCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCTGATGTGCACAAGAAAACTCAAGGTGTGGAGAAACCAAAAGAACGTAAGACGAAGAGACCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAAATTTCACAAGGATAGTGGTGCACCAAAACAAGCAGGGGTTAAACGCAAGCTTGATAATCGTACTCCTGACGTCACCTTTCGTAATAAGAAAGTAAAAAAGAACCGGTAA 1560 0.4494 MGKKKPKDLQQTPQTDTVSTPSSIFSKLFGNAPEQATAANPTGAASLFSDDNPFRRKPAPLSDTTNHSHIPFNGDAENLDVGYEKKRKRNKEKSPVLDSVSVTKVSEKSEKKRKRGFGEGREGDLTLGAEAIGKRKRKRDDVEREWEEKRYGAVEEGEKGEIENKTVGSKRKTLDDPADTMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPVQDTKKPRKGAILAKKINDAADSVHAYIVFKTEESAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEEVYQLFCGISNLESSVEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRSLKLRDRELRLTHAKADVTPSKRPNPSSAQAPTPSKRPNTSSTQAPGTPAKKFSVASRSPSSSINRSNRKTNASYQGLRATKSDVHKKTQGVEKPKERKTKRPSVAARKAKAKFHKDSGAPKQAGVKRKLDNRTPDVTFRNKKVKKNR 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01234 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 239 IPR000504 GO:0003723
Spst2g01234 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 380 IPR000504 GO:0003723
Spst2g01234 519 MobiDBLite consensus disorder prediction 1 177 - -
Spst2g01234 519 MobiDBLite consensus disorder prediction 384 519 - -
Spst2g01234 519 MobiDBLite consensus disorder prediction 392 450 - -
Spst2g01234 519 CDD RRM1_RBM34 195 285 - -
Spst2g01234 519 MobiDBLite consensus disorder prediction 452 471 - -
Spst2g01234 519 SUPERFAMILY RNA-binding domain, RBD 297 396 IPR035979 GO:0003676
Spst2g01234 519 Gene3D - 191 295 IPR012677 -
Spst2g01234 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 289 IPR000504 GO:0003723
Spst2g01234 519 MobiDBLite consensus disorder prediction 481 513 - -
Spst2g01234 519 MobiDBLite consensus disorder prediction 11 47 - -
Spst2g01234 519 Gene3D - 301 393 IPR012677 -
Spst2g01234 519 MobiDBLite consensus disorder prediction 79 95 - -
Spst2g01234 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 387 IPR000504 GO:0003723
Spst2g01234 519 CDD RRM2_RBM34 307 383 IPR034221 -
Spst2g01234 519 MobiDBLite consensus disorder prediction 104 121 - -
Spst2g01234 519 SUPERFAMILY RNA-binding domain, RBD 188 296 IPR035979 GO:0003676
Spst2g01234 519 MobiDBLite consensus disorder prediction 128 177 - -
Spst2g01234 519 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 286 459 - -
Spst2g01234 519 SMART rrm1_1 196 285 IPR000504 GO:0003723
Spst2g01234 519 SMART rrm1_1 307 383 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01234 197 370 Eukaryotic Initiation Factors Gene Family AT1G71770 26.554 1.60e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01234 K14837 - gmx:100784494 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01234 2 10913898 10917483 Spst2g01234 2 10913898 10917483 ECH