Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01230 ATGACCCAAGCCAAAATGTCTGACCGGGGCACCTTCTCCGGTGACTCGGCGGCGGATGCTAAAAGCAAAAAGGAACACAAAGTTTCTCTGCTGAAACTCTTCTCTTTTGCTGACTTTTATGACTGTATCTTAATGGCCGTTGGATCTATTGGGGCATGTGTACATGGTGCTTCTGTTCCGGTTTTCTTTATCTTTTTTGGCAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCTTTGGATTTTGTGTATCTAAGTGTAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCAGCAAAGATGAGAATGGCTTATTTGAAGTCAATGTTGAATCAAGATATAAGCCTATTTGACACTGAGGCATCAACAGGAGAGGTTATTTCAGCCATCACTAGTGACATTATCATTGTTCAAGATGCACTGTCGGAAAAGGTGGGGAACTTCATGCACTACATAAGCCGATTTGTAGCGGGGTTTATTATTGGTTTTGTAAGAGTATGGCAGATAAGTCTAGTGACACTTTCAATTGTGCCTTTGATTGCCCTTGCTGGAGGTCTTTATGCATACGTCACAATTGGCCTTATTGCAAAAGTTCGAAAAGCCTATGTGAAAGCTGGGGAAATTGCTGAAGAGGTTATAGGTAATGTGAGAACGGTTCAAGCATTTGCAGGAGAAGAAAGAGCAGTAAGGTCATATAAAGCTGCTCTCATGAAGACTTACGTAAACGGTAGAAAAGCAGGTTTAGCAAAGGGCCTGGGCCTGGGCTCAATGCATTGTGTCCTTTTTCTATCGTGGGCTTTGCTTGTTTGGTTCACTAGTATCGTTGTGCACAAAAATATTGCCAATGGAGGCGAGTCTTTCACTACCATGCTCAATGTTGTGATCTCTGGCCTGTCACTTGGACAGGCAGCACCAGATATCACTGCATTTATTCGAGCAAAGGCAGCAGCTTATCCAATCTTTGAGATGATAGAGAGGGACACTGTGAGCAAAAGAAGCTCAAAAACTGGTCGCAAGTTGGGCAAATTGGAGGGTCACATCCAATTTAAGAATGTCTGTTTCAGTTACCCATCTCGTCCAGATGTAGTAATATTCAACAACCTGTGCCTTGACATTCCTTCAGGGAAAATTGTAGCCCTTGTGGGAGGAAGTGGTTCGGGAAAGAGCACTGTCGTATCATTGATTGAACGCTTTTATGAACCACTTTCTGGTCAGATACTATTAGACAGGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGGCAGCAAATTGGGCTGGTTAATCAAGAACCTGCCCTTTTTGCTACAAGCATCAAGGAGAATATACTTTATGGAAAAGATAATGCCACCCTTGAAGAACTAAAGCGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGATAGACTGGAAACTCAGGTTGGTGAGAGAGGGATACAACTCTCAGGAGGGCAAAAGCAAAGGATTGCAATATCTCGTGCAATCGTGAAGAATCCATCAATCCTTTTGTTGGATGAAGCAACGAGTGCTCTGGATGCTGAGTCTGAGAAGAGTGTGCAGGAGGCTCTTGATCGTGTGATGGTTGGGAGAACAACTGTTGTAGTGGCACACAGACTTTCAACCATTAGGAACGCAGATGTGATTGCTGTTGTACAGGGAGGGAAGATTGTGGAAACTGGTAACCATGAAGAGCTCATGTCCAACCCAACTAGTGTATATGCATCTCTTGTTCAACTCCAGGAGACAGCTTCTCTGCAACGCCTCCCATCAGTTGGTCCTAGCATGGGACGCCAACCAAGCATAACCTACTCAAGAGAGATATCCCGTACAACCACCAGCCTTGGTGGTAGTTTTCGATCAGATAAAGAATCTATTGGTCGGGTTTGTGCCGAGGAAACAGAAAATGCAAGCAAGAAAAGGCGTGTTTCAGCAGCAAGACTGTATTCCATGGTTGGTCCTGACTGGGTTTATGGTGTTTTTGGGACCTTATGCGCATTTGTTGCTGGAGCACAGATGCCACTTTTTGCACTTGGAATTTCTCACGCACTTGTATCATACTATATGGACTGGGACACAACATGTCGCGAAGTAAAAAAAATTGCTTTCCTCTTCTGTGGAGCTGCAGTTATAACTATCACTGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTCACCCTTCGTGTGAGAGAAATGATGTTTTCAGCTATCTTGAAGAACGAAATTGGATGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCGTCACAGTTAGAGACTGATGCAACATTGTTAAGAACTATAGTCGTTGATCGTTCAACAATTCTGTTACAGAATATTGGTTTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACACTTATTGTCATAGCCACGTATCCTTTTGTCATTAGTGGTCATATCAGTGAGAAACTTTTTATGAAAGGCTACGGTGGCAACTTAAGCAAAGCATATCTAAAAGCCAACATGCTCGCTGGGGAGGCTGTGAGCAATATACGCACGGTGGCTGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGATCCCTCTAAACGCTCATTTAAAAGGGGCCAAATTGCTGGCATATTCTATGGCGTTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCTACTTTGATGGCAAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGTCATTCATGGTTTTGATAGTAACAGCACTGGCTATGGGGGAGACTTTGGCCCTGGCCCCAGACCTTTTGAAAGGGAACCAGATGGTTGCTTCAGTTTTTGAAGTGATGGATAGAAAGTCAGGAATAACCGGAGATGTTGGAGAAGAATTGAAAACAGTGGAGGGTACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTTAACCTAAGAGTTCCTGCAGGCAAGAGTGCTGCCCTAGTGGGGCAAAGTGGTTCTGGGAAAAGCTCTGTGATCTCTCTTATACTCAGATTTTACGATCCAATATCTGGAAGGGTGTTAATTGATGGCAAAGACATCACAAAACTTAATCTGAAATCTCTTAGGAGACACATTGGTCTTGTGCAACAAGAGCCAGCTCTTTTTGCAACATCAATTTATGAAAACATACTTTATGGAAAAGAAGGTGCTTCTGATTCAGAAGTTATCGAAGCAGCTAAGCTTGCCAATGCTCATAACTTCATCAGTGGTCTTCCTGAGGGTTACTCCACCAAGGTAGGTGAACGAGGAGTGCAACTATCTGGTGGCCAAAGACAAAGGGTAGCCATTGCAAGAGCAGTTCTAAAGAACCCTGAAATCTTGCTTCTTGATGAAGCCACTAGTGCACTTGATGTGGAGTCAGAGCGTGTGGTGCAGCAAGCATTGGATAGATTAATGCAGAACAGAACAACAGTTATGGTGGCACACAGGCTATCCACCATAAGAAATGCAGACCAAATCTCAGTTTTACAGGATGGAAAGATAATTGAACAAGGTACTCATTCAAGTCTCATAGAGAATAAAAATGGAGCATACTTTAAATTAGTCAACCTTCAACAACAGCAGCATCAATTATAG 3750 0.4269 MTQAKMSDRGTFSGDSAADAKSKKEHKVSLLKLFSFADFYDCILMAVGSIGACVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSVAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFVAGFIIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVKAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGESFTTMLNVVISGLSLGQAAPDITAFIRAKAAAYPIFEMIERDTVSKRSSKTGRKLGKLEGHIQFKNVCFSYPSRPDVVIFNNLCLDIPSGKIVALVGGSGSGKSTVVSLIERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDNATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGGKIVETGNHEELMSNPTSVYASLVQLQETASLQRLPSVGPSMGRQPSITYSREISRTTTSLGGSFRSDKESIGRVCAEETENASKKRRVSAARLYSMVGPDWVYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTCREVKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFILNWRITLIVIATYPFVISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSFKRGQIAGIFYGVSQFFIFSSYGLALWYGSTLMAKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDVGEELKTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSAALVGQSGSGKSSVISLILRFYDPISGRVLIDGKDITKLNLKSLRRHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYFKLVNLQQQQHQL 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01230 1249 FunFam ABC transporter B family member 19 995 1244 - -
Spst2g01230 1249 Pfam ABC transporter transmembrane region 50 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst2g01230 1249 Pfam ABC transporter transmembrane region 687 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst2g01230 1249 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524|GO:0016887
Spst2g01230 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst2g01230 1249 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Spst2g01230 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst2g01230 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 607 IPR027417 -
Spst2g01230 1249 SUPERFAMILY ABC transporter transmembrane region 673 986 IPR036640 GO:0005524|GO:0016020
Spst2g01230 1249 Gene3D - 1003 1246 IPR027417 -
Spst2g01230 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1241 IPR003439 GO:0005524
Spst2g01230 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1243 IPR027417 -
Spst2g01230 1249 Pfam ABC transporter 1024 1172 IPR003439 GO:0005524
Spst2g01230 1249 CDD ABC_MTABC3_MDL1_MDL2 1005 1243 - -
Spst2g01230 1249 Gene3D ABC transporter type 1, transmembrane domain 807 1002 IPR036640 GO:0005524|GO:0016020
Spst2g01230 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 990 - -
Spst2g01230 1249 Gene3D - 359 608 IPR027417 -
Spst2g01230 1249 FunFam ABC transporter B family member 4 359 614 - -
Spst2g01230 1249 SUPERFAMILY ABC transporter transmembrane region 32 339 IPR036640 GO:0005524|GO:0016020
Spst2g01230 1249 PANTHER ABC TRANSPORTER B FAMILY 13 610 IPR039421 -
Spst2g01230 1249 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Spst2g01230 1249 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Spst2g01230 1249 SMART AAA_5 396 582 IPR003593 GO:0016887
Spst2g01230 1249 SMART AAA_5 1032 1218 IPR003593 GO:0016887
Spst2g01230 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Spst2g01230 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 45 342 - -
Spst2g01230 1249 Gene3D ABC transporter type 1, transmembrane domain 32 611 IPR036640 GO:0005524|GO:0016020
Spst2g01230 1249 FunFam ABC transporter B family member 2 806 1002 - -
Spst2g01230 1249 FunFam ABC transporter B family member 1 32 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01230 Spst-Chr2 10851824 10860412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01230 47 613 Calmodulin-binding Proteins AT2G36910 38.957 7.42e-112 379