Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst2g01227 | ATGGCATGTGAATCTATGGTGCAGATACTCGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCAGCCTTGGTAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATAAACATTGATGTTTTGGGTGAAATTGCGATCACTGCTAAGTTGAACTCTCTTAATCAAGTTGAGACTGTAAGCCGCAGTTCAGATGAGTTCTTATACACTTTCAAAGTCCAGTATCTGCCACCGGTTGTTTTGACTTGTTTATTACCAAAGTCATACCCTAGCCGCCAATCACCTATTTTTACACTCTCTGTTAAGTGGTTAGAACCTGTGAAGATTCTGAATCTGTGCTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTACATGGTTCTTCGCTTTCTCATCTGGGATTTGATGAGGAAATCACACTTGGGCCTTATGGGATGAATCTTGTCCAGGATGAGCGTGTTATTTCTGGAGCTGAATGCTTTGATATTGATATTCCTTTTTTACGAAGTTACAATGACCAGAGACACAATGAGAACTTTTTCAAAGAATTACATCAATGTAACATTTGCTTTAGTGAATATGCCGGTTCTGAGTTTATCCGGTTACCATGTAAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAAATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGCCCCGAAGCAAAATGTACAGTAATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATAACACAGATTATGAGCGCTGGGAATCCATGATGTTAGAAAAAACACTTGCATCAATGTCTGATATTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCACAGTGCCCAAAATGCTATTTTAGCTTTTGTACTCTTTGCAGGGAACGGCGCCACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAAATTTTGCAGGACCGTCAAAATTCATCTCAATTAAAGGAAGATCAAAAGCGTAGGGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGAAATGTGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAAGCAATTGATCCATCAGATCCGTATGGACATTTCAGGGATGGTTCGTGTGAGCTGTTCCCACGAGAAATGGTTGAGTCCTGGGAAGAGCGCATAAATCATCGTCAGGCTGTAGGACAATTACAGGCTGAGCTTTTTCCGCAGCGTGGCTCCACTTGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTATGCAAAGAGATTGTCAGGCGCGGCACCAAGCATTATGGACCAAAGGGCTGCAAACAGCATTCCGAGGGATAG | 1515 | 0.4106 | MACESMVQILVVESIYGENVFSLGRWKGLRCFQIHINIDVLGEIAITAKLNSLNQVETVSRSSDEFLYTFKVQYLPPVVLTCLLPKSYPSRQSPIFTLSVKWLEPVKILNLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNLVQDERVISGAECFDIDIPFLRSYNDQRHNENFFKELHQCNICFSEYAGSEFIRLPCKHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDNTDYERWESMMLEKTLASMSDIVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSQLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPSDPYGHFRDGSCELFPREMVESWEERINHRQAVGQLQAELFPQRGSTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG | 504 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst2g01227 | 504 | SUPERFAMILY | RING/U-box | 192 | 276 | - | - | |
Spst2g01227 | 504 | SUPERFAMILY | UBC-like | 40 | 146 | IPR016135 | - | |
Spst2g01227 | 504 | Pfam | zinc-RING finger domain | 196 | 242 | IPR001841 | - | |
Spst2g01227 | 504 | FunFam | RBR-type E3 ubiquitin transferase | 338 | 447 | - | - | |
Spst2g01227 | 504 | SUPERFAMILY | RING/U-box | 449 | 501 | - | - | |
Spst2g01227 | 504 | ProSiteProfiles | Zinc finger RING-type profile. | 197 | 245 | IPR001841 | - | |
Spst2g01227 | 504 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 61 | 412 | IPR031127 | GO:0004842|GO:0016567 | |
Spst2g01227 | 504 | FunFam | RBR-type E3 ubiquitin transferase | 192 | 276 | - | - | |
Spst2g01227 | 504 | Coils | Coil | 504 | 504 | - | - | |
Spst2g01227 | 504 | CDD | BRcat_RBR_RNF14 | 276 | 327 | - | - | |
Spst2g01227 | 504 | ProSiteProfiles | TRIAD supradomain profile. | 193 | 423 | IPR044066 | - | |
Spst2g01227 | 504 | Gene3D | Ubiquitin Conjugating Enzyme | 7 | 143 | IPR016135 | - | |
Spst2g01227 | 504 | SMART | ring_2 | 453 | 482 | IPR001841 | - | |
Spst2g01227 | 504 | SMART | ring_2 | 285 | 373 | IPR001841 | - | |
Spst2g01227 | 504 | SMART | ring_2 | 197 | 244 | IPR001841 | - | |
Spst2g01227 | 504 | CDD | RING-HC_ITT1-like | 192 | 250 | - | - | |
Spst2g01227 | 504 | Gene3D | - | 338 | 445 | - | - | |
Spst2g01227 | 504 | SMART | ibrneu5 | 265 | 323 | IPR002867 | GO:0008270 | |
Spst2g01227 | 504 | SMART | ibrneu5 | 352 | 417 | IPR002867 | GO:0008270 | |
Spst2g01227 | 504 | SUPERFAMILY | RING/U-box | 356 | 412 | - | - | |
Spst2g01227 | 504 | Pfam | IBR domain, a half RING-finger domain | 360 | 404 | IPR002867 | GO:0008270 | |
Spst2g01227 | 504 | Pfam | IBR domain, a half RING-finger domain | 265 | 323 | IPR002867 | GO:0008270 | |
Spst2g01227 | 504 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 280 | IPR013083 | - | |
Spst2g01227 | 504 | SMART | RWD2001b | 9 | 142 | IPR006575 | GO:0005515 | |
Spst2g01227 | 504 | Pfam | RWD domain | 9 | 136 | IPR006575 | GO:0005515 | |
Spst2g01227 | 504 | ProSitePatterns | Zinc finger RING-type signature. | 214 | 223 | IPR017907 | - | |
Spst2g01227 | 504 | CDD | Rcat_RBR_RNF14 | 355 | 420 | IPR047548 | GO:0008270 | |
Spst2g01227 | 504 | ProSiteProfiles | RWD domain profile. | 7 | 142 | IPR006575 | GO:0005515 | |
Spst2g01227 | 504 | SUPERFAMILY | RING/U-box | 265 | 327 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst2g01227 | 196 | 427 | C3H Transcription Factor Family | AT2G31770 | 25.833 | 1.59e-15 | 77.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst2g01227 | K11971 | - | gmx:100500662 | 988.408 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst2g01227 | 2 | 10833355 | 10837422 | Spst2g01227 | 2 | 10833355 | 10837422 | ECH |