Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01227 ATGGCATGTGAATCTATGGTGCAGATACTCGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCAGCCTTGGTAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATAAACATTGATGTTTTGGGTGAAATTGCGATCACTGCTAAGTTGAACTCTCTTAATCAAGTTGAGACTGTAAGCCGCAGTTCAGATGAGTTCTTATACACTTTCAAAGTCCAGTATCTGCCACCGGTTGTTTTGACTTGTTTATTACCAAAGTCATACCCTAGCCGCCAATCACCTATTTTTACACTCTCTGTTAAGTGGTTAGAACCTGTGAAGATTCTGAATCTGTGCTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTACATGGTTCTTCGCTTTCTCATCTGGGATTTGATGAGGAAATCACACTTGGGCCTTATGGGATGAATCTTGTCCAGGATGAGCGTGTTATTTCTGGAGCTGAATGCTTTGATATTGATATTCCTTTTTTACGAAGTTACAATGACCAGAGACACAATGAGAACTTTTTCAAAGAATTACATCAATGTAACATTTGCTTTAGTGAATATGCCGGTTCTGAGTTTATCCGGTTACCATGTAAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAAATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGCCCCGAAGCAAAATGTACAGTAATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATAACACAGATTATGAGCGCTGGGAATCCATGATGTTAGAAAAAACACTTGCATCAATGTCTGATATTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCACAGTGCCCAAAATGCTATTTTAGCTTTTGTACTCTTTGCAGGGAACGGCGCCACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAAATTTTGCAGGACCGTCAAAATTCATCTCAATTAAAGGAAGATCAAAAGCGTAGGGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGAAATGTGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAAGCAATTGATCCATCAGATCCGTATGGACATTTCAGGGATGGTTCGTGTGAGCTGTTCCCACGAGAAATGGTTGAGTCCTGGGAAGAGCGCATAAATCATCGTCAGGCTGTAGGACAATTACAGGCTGAGCTTTTTCCGCAGCGTGGCTCCACTTGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTATGCAAAGAGATTGTCAGGCGCGGCACCAAGCATTATGGACCAAAGGGCTGCAAACAGCATTCCGAGGGATAG 1515 0.4106 MACESMVQILVVESIYGENVFSLGRWKGLRCFQIHINIDVLGEIAITAKLNSLNQVETVSRSSDEFLYTFKVQYLPPVVLTCLLPKSYPSRQSPIFTLSVKWLEPVKILNLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNLVQDERVISGAECFDIDIPFLRSYNDQRHNENFFKELHQCNICFSEYAGSEFIRLPCKHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDNTDYERWESMMLEKTLASMSDIVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSQLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPSDPYGHFRDGSCELFPREMVESWEERINHRQAVGQLQAELFPQRGSTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01227 504 SUPERFAMILY RING/U-box 192 276 - -
Spst2g01227 504 SUPERFAMILY UBC-like 40 146 IPR016135 -
Spst2g01227 504 Pfam zinc-RING finger domain 196 242 IPR001841 -
Spst2g01227 504 FunFam RBR-type E3 ubiquitin transferase 338 447 - -
Spst2g01227 504 SUPERFAMILY RING/U-box 449 501 - -
Spst2g01227 504 ProSiteProfiles Zinc finger RING-type profile. 197 245 IPR001841 -
Spst2g01227 504 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 412 IPR031127 GO:0004842|GO:0016567
Spst2g01227 504 FunFam RBR-type E3 ubiquitin transferase 192 276 - -
Spst2g01227 504 Coils Coil 504 504 - -
Spst2g01227 504 CDD BRcat_RBR_RNF14 276 327 - -
Spst2g01227 504 ProSiteProfiles TRIAD supradomain profile. 193 423 IPR044066 -
Spst2g01227 504 Gene3D Ubiquitin Conjugating Enzyme 7 143 IPR016135 -
Spst2g01227 504 SMART ring_2 453 482 IPR001841 -
Spst2g01227 504 SMART ring_2 285 373 IPR001841 -
Spst2g01227 504 SMART ring_2 197 244 IPR001841 -
Spst2g01227 504 CDD RING-HC_ITT1-like 192 250 - -
Spst2g01227 504 Gene3D - 338 445 - -
Spst2g01227 504 SMART ibrneu5 265 323 IPR002867 GO:0008270
Spst2g01227 504 SMART ibrneu5 352 417 IPR002867 GO:0008270
Spst2g01227 504 SUPERFAMILY RING/U-box 356 412 - -
Spst2g01227 504 Pfam IBR domain, a half RING-finger domain 360 404 IPR002867 GO:0008270
Spst2g01227 504 Pfam IBR domain, a half RING-finger domain 265 323 IPR002867 GO:0008270
Spst2g01227 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 280 IPR013083 -
Spst2g01227 504 SMART RWD2001b 9 142 IPR006575 GO:0005515
Spst2g01227 504 Pfam RWD domain 9 136 IPR006575 GO:0005515
Spst2g01227 504 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Spst2g01227 504 CDD Rcat_RBR_RNF14 355 420 IPR047548 GO:0008270
Spst2g01227 504 ProSiteProfiles RWD domain profile. 7 142 IPR006575 GO:0005515
Spst2g01227 504 SUPERFAMILY RING/U-box 265 327 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01227 196 427 C3H Transcription Factor Family AT2G31770 25.833 1.59e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01227 K11971 - gmx:100500662 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01227 2 10833355 10837422 Spst2g01227 2 10833355 10837422 ECH