Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01224 ATGGATAGCGGTGCGTCCGCTCCGGCGGCGCCGATTCCGAACGCGAATGCGCCGCCTCCGTTTCTGAGCAAGACTTACGACATGGTGGAAGACCCTTCCACCGACGCGATCGTGTCGTGGAGCGCTACCAACAACAGCTTCATCGTGTGGGACCCACCCGAATTCGCCAGAGACCTCTTACCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTATGGTTTCAGGAAGGTCGATCCAGATCGTTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAACATTTGCTTAGGAGTATAACACGACGAAAACCTGCCCACGGTCAAAATCATCAACAGGCTCAGCAACCCCATGGACAGAATTCATCGGTAGGGGCATGTGTTGAAGTCGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAACGTGCTCATGCAAGAGCTTGTAAGGTTGAGGCAGCAGCAACAGACCACTGATAACCAGTTGCAAACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCGAAAGCCGTTCAGAGCCCTGGATTCTTTGCCCAGTTTGTACAACAAAATGAGAGCAACAGGCGCATAACTGAAGTCAACAAAAAGCGTCGGCTTAAGCAGGAAGGTATTGCAGAAACAGTGCCTGCTGCTAATCCAGATGGACAAATTGTTAAATATCAACCTCTGATTAATGAAGCAGCAAAAGCCATGCTTAAGCAGATCATGAAATGGGATACTTCTCGTACAGAATCTTTTAATAAAAACCCTGATGACTACATGATTGGTGATGCTTCATCATCTTCCAGTGGAATGGATAGTAGCGCTTCCTCAGGCTGGACTTCTGGGGTAACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTGCCAGCTGCCACTGGGACCCAAGGGCATGTCCCCCCAACTGTTAAACCTGAAACTTTATCTGTACCACAAGCAGTAGCTTCTGAAAATGTTACAAATGATGGAGGACATGGTGCACCTCCTATCCCTGTTTCTCAAGCAGATATGGTGATCCCTGATCTTCCTCCAATAACAGAGATGGTGACAGGAAATATTCTTGATATTCCTGAAGAAAATTATATGGCAACTGAGACAGATGAGGGATATATGGATCCTTCATTGGGGGCTACTGGATCATTTCCCATTGATTTTGAAGTCATTTCACCTGATAACATTGATGATTTGTTAGGCAATCCTATTTGGGATGAAATTTTGCAAACCCCAGTTCCAGAGGATATTGAGACCAATATTGCCGATGTATCGAATGAGGTCCAGCCAACGGAAAATGGATGGAGTAAAACTCAACATATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTTTGA 1461 0.4586 MDSGASAPAAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGQNHQQAQQPHGQNSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQNESNRRITEVNKKRRLKQEGIAETVPAANPDGQIVKYQPLINEAAKAMLKQIMKWDTSRTESFNKNPDDYMIGDASSSSSGMDSSASSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVPPTVKPETLSVPQAVASENVTNDGGHGAPPIPVSQADMVIPDLPPITEMVTGNILDIPEENYMATETDEGYMDPSLGATGSFPIDFEVISPDNIDDLLGNPIWDEILQTPVPEDIETNIADVSNEVQPTENGWSKTQHMDHLTEQMGLLSSDTKRV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01224 486 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 294 IPR027725 -
Spst2g01224 486 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g01224 486 MobiDBLite consensus disorder prediction 113 130 - -
Spst2g01224 486 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Spst2g01224 486 FunFam Heat shock transcription factor 1 14 111 - -
Spst2g01224 486 MobiDBLite consensus disorder prediction 111 130 - -
Spst2g01224 486 Gene3D - 14 111 IPR036388 -
Spst2g01224 486 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g01224 486 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g01224 486 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g01224 486 Coils Coil 139 166 - -
Spst2g01224 486 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g01224 486 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01224 Spst-Chr2 10819790 10823224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01224 8 483 HSF AT1G32330 56.768 5.92e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst2g01224 HSF_DNA-bind 3.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01224 K09419 - gmx:100815121 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01224 2 10819790 10823224 Spst2g01224 2 10819790 10823224 ECH