Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01221 ATGAGCTTTCAGGACATCGAGGCTGGCCGACCTTTCGCTTCCCGGCGCAAGATGGCCGACGGCAAACCAGACCCTACGCAAGCGGTGGCTTCCGGCATATTTCAGATCAATACTGCCGTCTCCACGTTCCAACGACTCGTCAACACCCTGGGAACCCCCAAGGACACGCCTGAACTGCGTGATAAGCTGCATAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGAATAAACTTAAGCAAGCTAGTGAGATTGATCACAATGTTGACGTTAATGCGAGTAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGTCGGTGTTGAAAGAGTTTCAGAAGGCTCAGCGTCTTGCAGCTGAGAGGGAAACAGCTTACAGTCCTTTTGTTCCACAGGCAGTTCTTCCATCCAGCTACACAGCTGGCGAAGTAGACATCAGTTCTGATAAGACTCCAGAACAGCGGGCACTTCTTGTGGAATCTAGAAGACAGGAGGTATTATTCTTAGATAATGAGATTGCATTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCTGTTCTTGTTCATGAGCAAGGAACAATGATTGATGATATTGGGTCCAATATTGAGAATTCTCATGAAGCAACTCTGCAAGCAAAATCTCAACTTGGCAAAGCTTCAAAGACGCAAAGATCAAATTCATCTTTGACATGCTTGCTTTTGGTGATATTTGGGGTCGTGCTTCTAATAGTCATCGTTGTCCTTGCTGCTTAG 822 0.4513 MSFQDIEAGRPFASRRKMADGKPDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSNKLKQASEIDHNVDVNASKKIADAKLAKDFQSVLKEFQKAQRLAAERETAYSPFVPQAVLPSSYTAGEVDISSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHEATLQAKSQLGKASKTQRSNSSLTCLLLVIFGVVLLIVIVVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01221 273 SUPERFAMILY t-snare proteins 26 235 IPR010989 GO:0016020|GO:0016192
Spst2g01221 273 Gene3D - 23 133 - -
Spst2g01221 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst2g01221 273 PANTHER SYNTAXIN 26 265 IPR045242 -
Spst2g01221 273 MobiDBLite consensus disorder prediction 1 26 - -
Spst2g01221 273 SMART tSNARE_6 175 242 IPR000727 -
Spst2g01221 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Spst2g01221 273 CDD SynN 27 148 IPR006011 GO:0016020
Spst2g01221 273 FunFam Syntaxin-22 like 173 273 - -
Spst2g01221 273 FunFam Syntaxin-22 like 20 133 - -
Spst2g01221 273 Pfam SNARE domain 216 268 IPR000727 -
Spst2g01221 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Spst2g01221 273 Gene3D - 174 273 - -
Spst2g01221 273 SMART SynN_4 14 127 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01221 Spst-Chr2 10806473 10809253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01221 1 261 SNARE and Associated Proteins AT5G46860 78.544 1.96e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01221 - - gmx:100810149 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01221 2 10806473 10809253 Spst2g01221 2 10806473 10809253 ECH
Spst2g01221 2 10806473 10809253 Spst3g02704 3 76566268 76577175 PCT