Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01207 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCAGACACTCTCTTCTCCTCCTCGATCCAGAACTCTAACTTCAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCCATGGTAATTGATGAATCCACACAGAAGGAAGAAGATGGGATGCTGCGAGGGAAGGAAGAGATGGAAAGTGGGTCAGGGAGTGAACAAATTGAAGACAAGTCAGGGAATGAACAAGAGAGTGAACAGCCCACAAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGCTTAAACTGAGCCATGAATTGGGCCTGAAACCGCGCCAGGTTAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGATCGGGCAGATAATGTCATACTTAGAGCCGAGAATGAGTCTCTAAAGAGTGAGAACTATCGTTTACAAGCTGCACTGCGTAACGTTATGTGTCCCAATTGTGGTGGCCCATGCATAATGGGTGCTGATCTGGGTTTGGATGAACACCAACTTCGCATTGAAAATGCCCGGTTAAGAGAAGAGTTAGAACGCGTGTGTTGCCTCACTTCAAGGTACACTGGGCGTTCATTACAAACAATGGCAGGAGGTCCTACTCTCATGGCCCCTTCATTGGATTTGGATATGAACATATATCCTAGGCACTTTGGGGATCCTATTGCTCCTTGCACAGAAATGATTCCGGTGCCAATGTTGCCTCCCGAAGCTTCACCATTTTCTGAGGGTGGAGGAGTCTTAGTGGAAGAAGAGAAGTCTCTAGCCTTAGAGCTAGCGGCAACTTCCATGGCTGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATTCGAAGCAGTGAGGGTGAAAGGGAAGTGCTAAATTTTGAAGAGCACGCGAGGATGTTTTCTTGGCCTCGGAATCTCAAGCACCGAAGTGAAATGAGGACTGAAGCTAGTCGTGACACTGCTGTGGTTATAATGAATAGCGTCACTCTTGTTGATGCTTTCCTTGATTGTCAAAAGTGGATGGAATTGTTTCCTACCATCGTGTCTAGGGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCTGGCCATGCAACCGGAACTCTTCAGCTGATGTACGCAGAATTTCAAGTTCTTTCTCCTTTGGTGTCCACTCGCGAGACTCATTTTCTTCGTTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGACAGCTTTCAGCAAAATTTTCACCCTTCTTATCCAAGATATTGCAGGAGATCCTCTGGGTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCAGTGCATCAGATATTCAGCAACTATGTGTACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGCGAGAGGGTCGCGAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCGCCAGAAGCGCGAAAGAACTTGATGAAGCTAGCCCAAAGAATGATAAAAACGTTTGGCCTTAACATGAGTACCTCCGGTGGTCAATCGTGGACAGCCATATCAGATTCCCCTGAAGACACAGTTAGAATCACAACTAGGAAAATCACCGAACCTGGCCAACCTAATGGTGTGATTCTAAGTGCTGTCTCAACCACTTGGTTGCCCTATTCTCATACCAGGGTCTTTGATCTCCTCAGGGACGAACGACACAGATCTCAGATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCACTCCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACGGACCAGTCTGGAAGCCTGGTAGTGTACACCACCATTGATGTGGATTCCATCCAGCTAGCCATGAGTGGTGAGGACCCTTCTTGCATTGCCCTTCTTCCCCAAGGCTTCATGATAGTGCCAATGCTATCATCATCCAACGTTGACACACCCATCGATGCTAACTCCTCAGAGCCTCCATCTCTCAACTCAGGTTGCCTCCTAACCATGGGGCTCCAAGTTCTCGCCAGCACAATCCCTTCTGCAAAGCTCAACCTCTCAAGTGTCACGGCCATCAACAACCACCTCTGCAACACCTTGCACCAAATTGAAGCAGCTCTTTCTAGTAGCAATGAGAATGGCACCAATTTCCTTTGTGCTGAACCCACCATTAGTGCACCTCCAAAGCAGTGA 2397 0.4693 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMVIDESTQKEEDGMLRGKEEMESGSGSEQIEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENESLKSENYRLQAALRNVMCPNCGGPCIMGADLGLDEHQLRIENARLREELERVCCLTSRYTGRSLQTMAGGPTLMAPSLDLDMNIYPRHFGDPIAPCTEMIPVPMLPPEASPFSEGGGVLVEEEKSLALELAATSMAELVKMCQTNEPLWIRSSEGEREVLNFEEHARMFSWPRNLKHRSEMRTEASRDTAVVIMNSVTLVDAFLDCQKWMELFPTIVSRAKTVQIISSGASGHATGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFQQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFGLNMSTSGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILSAVSTTWLPYSHTRVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMLSSSNVDTPIDANSSEPPSLNSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSSSNENGTNFLCAEPTISAPPKQ 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01207 798 SUPERFAMILY Bet v1-like 283 518 - -
Spst2g01207 798 Pfam START domain 292 516 IPR002913 GO:0008289
Spst2g01207 798 SUPERFAMILY Homeodomain-like 82 149 IPR009057 -
Spst2g01207 798 SUPERFAMILY Bet v1-like 543 772 - -
Spst2g01207 798 SMART HOX_1 89 152 IPR001356 GO:0003677
Spst2g01207 798 FunFam Homeobox-leucine zipper protein HDG1 78 164 - -
Spst2g01207 798 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Spst2g01207 798 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 87 775 IPR042160 -
Spst2g01207 798 MobiDBLite consensus disorder prediction 53 98 - -
Spst2g01207 798 MobiDBLite consensus disorder prediction 53 91 - -
Spst2g01207 798 CDD homeodomain 91 149 IPR001356 GO:0003677
Spst2g01207 798 CDD START_ArGLABRA2_like 286 515 - -
Spst2g01207 798 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Spst2g01207 798 Gene3D - 294 505 IPR023393 -
Spst2g01207 798 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Spst2g01207 798 Gene3D - 76 159 - -
Spst2g01207 798 SMART START_1 291 516 IPR002913 GO:0008289
Spst2g01207 798 ProSiteProfiles START domain profile. 282 519 IPR002913 GO:0008289
Spst2g01207 798 FunFam Homeobox-leucine zipper protein GLABRA 2 291 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01207 Spst-Chr2 10674984 10680425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01207 8 778 Homeobox Transcription Factor Family AT5G46880 57.660 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst2g01207 START 5.2e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01207 - - gmx:100812829 1429.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01207 2 10674984 10680425 Spst2g01207 2 10674984 10680425 ECH
Spst2g01207 2 10674984 10680425 Spst10g01005 10 10710230 10714498 ECH