Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01197 ATGTCGCCGCAATATTTGGTCGTGGCTTTTCCGTTTGTTCTGTCAGCCTTGACAGATCTTGCTTTTGATTTTGCTCAAGCTTCGGAGGATCACAGTCTCTACAGTATGGGCAGCAGTGAGATGGATAAAGCTCCAAAAGAGAAGGAGTCAAAAACGCCACCACCTACGTCACAGGAGCAATCTTCGACCACAGCTACTGGAACAGTTAATCCTGATTGGCCGGGATTTCAGGCTTATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCCTATGGTACTCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGCCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGGCTTCAGGAAACACTCCTGGCAGCATGGAAGCCGATGGTAAGCCTCCTGAAGTGAAGGAAAAATTGCCAATTAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGAAAAAGTAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCAAAGAGAGCCCAGCATCATCCTGTTGAGTATTGGCTTGCCATTTGCAATTGCATATGGGCGACTTATGCTGATAAGAAATCTTTGATTTGTAGCGGTGATAGTGCAAGTGAAGGTGAAGGTACCAGTGAAGGAAGTGATGCAAATTCCCAAAACGACTCTCAATTGAAATCAGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTCAGCGTATACTCCTCAAAATGGGGGCCTAAATACACCTCACACGGTTGTCAATCAAACTATGCCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGTCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCGTCCAACATTCCTGCACTTGCTAGAAAAGTTCCATCTACTGCTGCAGTTGCTGGATCACGGGATAGTGTTCAGTCACAACTCTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGATCCAGGTTGCGTAAGCAGGCTGAGTGTGACGAGTTAGCTCAGCGTGCCGAGGCTTTGAAAAAAGAAAATGCTTCTCTCCGGTCAGAAGTAAGTAGAATCAGGAGTGAGTATGAGCAGTTACTCTCCGAGAACACTGCTCTCAAGGAAAGACTTGGGGAACTACCTGCGAACGATGATCATCATAGGTCTGGCAGGAACAATCAGCATGTGGGCAATGACGCCCAACAGAGTGGGCAGACAGAGGCTGTGCCAAGTGATCAGTAG 1404 0.4651 MSPQYLVVAFPFVLSALTDLAFDFAQASEDHSLYSMGSSEMDKAPKEKESKTPPPTSQEQSSTTATGTVNPDWPGFQAYSPIPPHGFLASSPQAHPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKSNEHGKTPGTSANGIHSKRAQHHPVEYWLAICNCIWATYADKKSLICSGDSASEGEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGSSAYTPQNGGLNTPHTVVNQTMPIIPISAGGAPGPTTNLNIGMDYWGTPASSNIPALARKVPSTAAVAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKKENASLRSEVSRIRSEYEQLLSENTALKERLGELPANDDHHRSGRNNQHVGNDAQQSGQTEAVPSDQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01197 467 MobiDBLite consensus disorder prediction 241 296 - -
Spst2g01197 467 MobiDBLite consensus disorder prediction 428 467 - -
Spst2g01197 467 PANTHER G-BOX-BINDING FACTOR 3-RELATED 36 459 IPR044827 GO:0003700|GO:0006355|GO:0043565
Spst2g01197 467 Gene3D - 365 418 - -
Spst2g01197 467 Pfam Disordered region downstream of MFMR 170 210 - -
Spst2g01197 467 Pfam Disordered region downstream of MFMR 238 334 - -
Spst2g01197 467 SMART brlzneu 362 426 IPR004827 GO:0003700|GO:0006355
Spst2g01197 467 MobiDBLite consensus disorder prediction 54 73 - -
Spst2g01197 467 MobiDBLite consensus disorder prediction 363 386 - -
Spst2g01197 467 MobiDBLite consensus disorder prediction 448 467 - -
Spst2g01197 467 CDD bZIP_plant_GBF1 367 417 IPR045314 GO:0003700|GO:0006355
Spst2g01197 467 MobiDBLite consensus disorder prediction 181 207 - -
Spst2g01197 467 MobiDBLite consensus disorder prediction 36 75 - -
Spst2g01197 467 Coils Coil 382 430 - -
Spst2g01197 467 MobiDBLite consensus disorder prediction 179 207 - -
Spst2g01197 467 Pfam G-box binding protein MFMR 36 131 IPR012900 -
Spst2g01197 467 SUPERFAMILY Leucine zipper domain 365 421 IPR046347 GO:0003700|GO:0006355
Spst2g01197 467 MobiDBLite consensus disorder prediction 432 447 - -
Spst2g01197 467 MobiDBLite consensus disorder prediction 240 296 - -
Spst2g01197 467 Pfam bZIP transcription factor 362 424 IPR004827 GO:0003700|GO:0006355
Spst2g01197 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 364 427 IPR004827 GO:0003700|GO:0006355
Spst2g01197 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 369 384 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01197 Spst-Chr2 10575491 10589646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01197 36 461 bZIP Transcription Factor Family AT2G35530 58.716 7.72e-160 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst2g01197 MFMR_assoc 8.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01197 K09060 - gmx:100101882 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01197 2 10575491 10589646 Spst2g01197 2 10575491 10589646 ECH
Spst2g01197 2 10575491 10589646 Spst3g03667 3 86726542 86735135 PCT