Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01174 ATGGGTCGGAAGCACGACGCCGTTTTGATAAGCGAACCAGTCGCCGACGAAGCCCCCGAGCTCGATTGCGAGAAGAGGAAGAAGAAAAAGAAGAATAAGAACAAAGACAAGCAGCACCAAAACGAAAGCAGCCCCAAACGAAAACTCGACGAACTCCACCCTGAAAACGGTAACGAATCGAAGAAGAAGAAAAAGAATAAGCATCACGATTCCAAAGAGAACGCCGAGGAAACCAACGGTGAGAAAAACAACGACAACGGCGCTAATGGCGATGAAACGGTGAAGAACGGGTCTGTGGTGGTTACCGGCAAAAATGCGGCAGACGCGAAGTACGCGGAGGTGAAAACGTTTTCGGATTCCGGGCTGCCGGATAATGTGCTGGCGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCTATTCAGTCGCGGGCGTGGCCTTTCTTATTGGACGGTCGTGATTTGATTGGAATCGCTGCCACTGGATCAGGGAAAACGTTGGCGTTCGGGATACCAGCGGTTATGCATGTTTTGGGAAAGCGAAAGGGTAAAGGTTCCAAGGGGCGAAATCCTCTTTGCCTCGTGCTCTCTCCTACTAGAGAACTAGCACAACAAATATCAGATGTCATGTGTAACGCTGGTAGTTCTTGTGGTGTGGAATCGATCTGTTTGTATGGAGGAACTTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACTCCTGGTCGTATCCAGGATCTAATTGAAATGGGTGTCTGTTGCCTCAAAGAAGTATCTTTTGTGGTACTTGATGAAGCGGATAGGATGCTTGACATGGGATTTGAACAAATAGTTCGCTCTATACTGGGTCAGACATGTTCTGATCGTCAAATGGTCATGTTCAGTGCTACATGGCCTTTGGCAGTTCATCACTTGGCTCAGGAGTTTATGGATCCTAATCCAATAAAAGTTGTTGTAGGTTCAGAAGACTTAGCTGCCAATCACGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTTCTCGTGATAGGCGCCTAGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGCAATCGAGTATTGGTCTTTGTTTTATACAAAAATGAAACCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTATCAATACATGGGGACAAAGCTCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAAGGGAACCTGTCCTTTGATGATTGCTACTGATGTGGCTGCGCGGGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGCGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGGGAAGCAGGGCAAGTTGTACCCGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTACGGGGCGCACTTCAAGGAAATCCCTGTTGATGCCCCAAAGTCTCAAAAGAAAACATTTGACGACTCTGACGATGAAGACTAA 1605 0.4623 MGRKHDAVLISEPVADEAPELDCEKRKKKKKNKNKDKQHQNESSPKRKLDELHPENGNESKKKKKNKHHDSKENAEETNGEKNNDNGANGDETVKNGSVVVTGKNAADAKYAEVKTFSDSGLPDNVLACCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLGKRKGKGSKGRNPLCLVLSPTRELAQQISDVMCNAGSSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLAVHHLAQEFMDPNPIKVVVGSEDLAANHDVMQIVEVLDDRSRDRRLVALLEKYHKSQSNRVLVFVLYKNETKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKKGTCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDDSDDED 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01174 534 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Spst2g01174 534 SMART ultradead3 132 338 IPR014001 -
Spst2g01174 534 FunFam ATP-dependent RNA helicase RhlB 324 501 - -
Spst2g01174 534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 321 IPR014001 -
Spst2g01174 534 MobiDBLite consensus disorder prediction 81 95 - -
Spst2g01174 534 Pfam Helicase conserved C-terminal domain 349 458 IPR001650 -
Spst2g01174 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 471 IPR027417 -
Spst2g01174 534 MobiDBLite consensus disorder prediction 36 61 - -
Spst2g01174 534 MobiDBLite consensus disorder prediction 1 95 - -
Spst2g01174 534 CDD DEADc 131 322 - -
Spst2g01174 534 Pfam DEAD/DEAH box helicase 138 306 IPR011545 GO:0003676|GO:0005524
Spst2g01174 534 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 141 IPR014014 GO:0003724
Spst2g01174 534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 497 IPR001650 -
Spst2g01174 534 Gene3D - 55 323 IPR027417 -
Spst2g01174 534 SMART helicmild6 377 458 IPR001650 -
Spst2g01174 534 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 61 493 - -
Spst2g01174 534 CDD SF2_C_DEAD 335 467 - -
Spst2g01174 534 Gene3D - 324 500 IPR027417 -
Spst2g01174 534 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01174 Spst-Chr2 10356190 10360324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01174 114 466 Eukaryotic Initiation Factors Gene Family AT3G19760 32.958 1.32e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01174 K14811 - gmx:100806057 922.924