Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01143 ATGGCAGGGTCTCTGACACCAGGGGCGATAAAGGAAATATGCGGTGCCAATTGCTCAAGTGGTTTGAAACCGGTGCTACAGGTTATAGATTTAAAGTTGGTGCAGTCGCAGCAAGCCAGTAACACCGAGAGGTACCGGTTGGTTCTTTCCGATGGTTCCTTTTACCAGCAAGGCATGCTCGCCACGCAGATGAATGACCTGGTTCATTCCGGAAGGTTGCAGAAAGGTTCCGTTGTTAGACTCGTTCAGTTCATCTGTAACGATGTTCAGAACCGCAAGATTATTGTCATCATTGACCTAGATGTTGTACTGGAAAAATGTGAGCTGATTGGAGAACCTGTCGCATTGCCAAAGGATGGAACTGCAGAATCTGGCAATGGTCAATCAGGAGTCACCCCTGGAAATTCACAACTTTTGAATAACCGTTCACACTCAGGTGGCGTGACTGGTAGACCGAGTGTGGCTGCAGCATCTCCAGATCAACCAAGAGTGAATCCTCCTGCCAGTAGTGCATATTCTAGTATTTCCAACTCTGGATCTGGTTATTCTAGTAATGCACCTCCTACATATCCTAAAGTAGAGCCTGGAGTTAATTTGTCTAGATCAGCATCATTCAGTGGCTCTTATGGTGATCAGAACACTGGTATTCGTCATCCCCAATCTGAGGCTACAAGGCCCTTACAAAACTCTTATGCTCGTCCTCCTCAGCCTATGTATCGGCAGCCATCTCCAATGTACACTAACAGAGGGCCGATTGGAAGAAATGAAGCTCCCCCCAGGATAATTCCAATAGCGGCATTGAATCCTTATCAGAATATGTGGACGATTAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCTCGTGGTGATGGCAAGGTGTTTTCTTTTGACCTTCTGGATTCTGATGGTGGACAAATTCGGGCAACTTGCTTTAATAGTGTGGCTGATCAGTTCTATAATGTAATTGAAGCTGGTAAGGTATACCTCGTTTCCAGGGGAAGCGTAAAGCCAGCTCAGAAGAATTTCAATCACCTCCCCAATGATCAAGAGCTAACCCTTGATATGACATCCACTATACAGCCATGCCTTGATGATGATAACACAATTCCCAAGCAGACTTTTAATTTTCGCCCCATTAGCGAAATTGAAAGTTTGGAAAACAACACCATTGTGGATGTGATTGGTGTGGTGACTTCAATCAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAACCCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTAGAGTTAACTTTGTGGGGAAATTTTTGCAACGTGGAAGGACAAAGACTGCAAAATATTTGCGATGAAGGGACGTTTCCAGTTTTGGCGACAAAAACTGTCAGAATTAATGATTTCAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTGCTGTTTGTAGAGCCTGATTTTCCAGAGGCTTACACACTGAAAAGATGGTATGAAAATGAAGGGAAGAATGGCCCAACACTCTCTATTTCTAGAGAAACATCCAATTTTGCAAAGAATGAAATTAGGAAGACTATATCTCAAATTAAAGACGAGAAGTTAGGGACTTCAGAAAAGGCTGATTGGATATCTGTCTGTGCAACTCTTTCATACATGAAGTTAGATTACTTTTGTTACCCAGGATGCCCTATCATGATTGGAGATAGGCAATGTAATAAAAAAGTTACTAATAATGCTGATGGAAAATGGTTTTGTGACAGGTGTAATCAATCTATTGACGCATGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACTGGTGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGCATGCCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAGATGATGTAAGATTTGCTGAAATCATCCGGAAGATTCTTTTCACCGAATATGTGTTCAAGTTGAAAGTAAAGGAGGAGACATTCAGTGATGAACAACGCGTTAAGTCAACAGTAGTAAAAGCAGAAAAGGTAAACTATGCATCTAAATCGAGAGATAGTTTGGATTTGATTGATAAACTCATGACTGGGAAATCGGAAGGTGTTACCACCGTACCCAACTCTTTCTCCAGTAATAGTGGACTTGGAAGTGTTGAAACTGGACAAGTAATGTCATCTGCTTATAACCCAATAAACACTAATAGCAGTAGATATTTTGGTAAGCCAGCAAATCAAGTGAATCAACAGTATGGAAACCAACAAGGTAATTCAGCAGGTGCTCCTGGTGCATATACATCATGCACCAACTGTGGAGGCTCTGGCCATACTTCTATGCTTTGCCCAAATATTAGAAATCTCCCTGGACAGTCTTCAGGAGGGGGCTTTTCAAACAGGGCATCATACGGTGCTCCGGGTGGTGGTGCTTCTGGTGAATGCTTCAAATGCCATCAACCTGGCCATTGGGCAAGAGACTGTCCTGGTTCCAGTGCAGCAACTGGATCATATGGCAGCACTAATGCAATGCAGGGAAGATATGGTATTGCTCAAAAGCAACAGTTTGGAGGATATTGA 2598 0.4284 MAGSLTPGAIKEICGANCSSGLKPVLQVIDLKLVQSQQASNTERYRLVLSDGSFYQQGMLATQMNDLVHSGRLQKGSVVRLVQFICNDVQNRKIIVIIDLDVVLEKCELIGEPVALPKDGTAESGNGQSGVTPGNSQLLNNRSHSGGVTGRPSVAAASPDQPRVNPPASSAYSSISNSGSGYSSNAPPTYPKVEPGVNLSRSASFSGSYGDQNTGIRHPQSEATRPLQNSYARPPQPMYRQPSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNVIEAGKVYLVSRGSVKPAQKNFNHLPNDQELTLDMTSTIQPCLDDDNTIPKQTFNFRPISEIESLENNTIVDVIGVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQNICDEGTFPVLATKTVRINDFNGKSVGTIMTSLLFVEPDFPEAYTLKRWYENEGKNGPTLSISRETSNFAKNEIRKTISQIKDEKLGTSEKADWISVCATLSYMKLDYFCYPGCPIMIGDRQCNKKVTNNADGKWFCDRCNQSIDACDYRYILSFQIMDHTGVTWVTAFQESGEEIMGMPAKDLYYLKYEEQDDVRFAEIIRKILFTEYVFKLKVKEETFSDEQRVKSTVVKAEKVNYASKSRDSLDLIDKLMTGKSEGVTTVPNSFSSNSGLGSVETGQVMSSAYNPINTNSSRYFGKPANQVNQQYGNQQGNSAGAPGAYTSCTNCGGSGHTSMLCPNIRNLPGQSSGGGFSNRASYGAPGGGASGECFKCHQPGHWARDCPGSSAATGSYGSTNAMQGRYGIAQKQQFGGY 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01143 865 FunFam Replication protein A subunit 512 703 - -
Spst2g01143 865 MobiDBLite consensus disorder prediction 122 148 - -
Spst2g01143 865 MobiDBLite consensus disorder prediction 163 187 - -
Spst2g01143 865 SUPERFAMILY Retrovirus zinc finger-like domains 807 837 IPR036875 GO:0003676|GO:0008270
Spst2g01143 865 Gene3D - 3 116 IPR012340 -
Spst2g01143 865 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Spst2g01143 865 SUPERFAMILY Nucleic acid-binding proteins 260 373 IPR012340 -
Spst2g01143 865 Gene3D - 260 370 IPR012340 -
Spst2g01143 865 CDD RPA1N 8 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Spst2g01143 865 MobiDBLite consensus disorder prediction 199 236 - -
Spst2g01143 865 MobiDBLite consensus disorder prediction 116 257 - -
Spst2g01143 865 FunFam Replication protein A subunit 373 511 - -
Spst2g01143 865 FunFam Replication protein A subunit 4 117 - -
Spst2g01143 865 PANTHER REPLICATION FACTOR A 1, RFA1 274 686 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Spst2g01143 865 Pfam Replication protein A OB domain 384 487 IPR031657 -
Spst2g01143 865 CDD RPA1_DBD_A 263 366 - -
Spst2g01143 865 SUPERFAMILY Nucleic acid-binding proteins 379 507 IPR012340 -
Spst2g01143 865 NCBIfam replication factor-a protein 1 (rpa1) 235 701 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Spst2g01143 865 CDD RPA1_DBD_B 395 502 - -
Spst2g01143 865 Gene3D - 511 704 IPR012340 -
Spst2g01143 865 Pfam OB-fold nucleic acid binding domain 274 355 IPR004365 GO:0003676
Spst2g01143 865 ProSiteProfiles Zinc finger CCHC-type profile. 821 835 IPR001878 GO:0003676|GO:0008270
Spst2g01143 865 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Spst2g01143 865 Pfam Replication factor-A C terminal domain 545 694 IPR013955 -
Spst2g01143 865 Gene3D - 772 843 - -
Spst2g01143 865 FunFam Replication protein A subunit 260 370 - -
Spst2g01143 865 ProSiteProfiles Zinc finger CCHC-type profile. 776 791 IPR001878 GO:0003676|GO:0008270
Spst2g01143 865 Gene3D - 373 510 IPR012340 -
Spst2g01143 865 Pfam Zinc knuckle 820 835 IPR001878 GO:0003676|GO:0008270
Spst2g01143 865 CDD RPA1_DBD_C 529 702 IPR047192 -
Spst2g01143 865 SMART c2hcfinal6 775 791 IPR001878 GO:0003676|GO:0008270
Spst2g01143 865 SMART c2hcfinal6 820 836 IPR001878 GO:0003676|GO:0008270
Spst2g01143 865 SUPERFAMILY Nucleic acid-binding proteins 526 704 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01143 Spst-Chr2 10108529 10111839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01143 1 802 Core DNA Replication Machinery Family AT5G45400 51.865 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01143 K07466 - gmx:100778597 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01143 2 10108529 10111839 Spst2g01143 2 10108529 10111839 ECH