Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01132 ATGGTTAAGCATAACAATGTCATCCCCAGCGGGCACTTCCGCAAGCACTGGCAAAACTATGTGAAGACCTGGTTCAATCAACCAGCAAGGAAGACAAGAAGACGGTTGGCTCGTCAAAAGAAAGCTGTGAAGATTTTCCCAAGGCCCACAGCAGGACCTCTCAGACCTATTGTGCATGGTCAAACTTTGAAATACAATATGAAAGTTAGAGCTGGGAGAGGTTTTTCCCTTGAAGAGCTTAAGGGGGCTGGTATTCCCAAAAAGCTTGCTCCAACAATTGGAATTGCTGTTGATCACCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAACAAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTGTTCCCGAGACGGGCGCGCAAGGTCAAGGCTGGAGACTCAACTCCCGAGGAACTTGCAAATGCAACACAAGTCCAGGGTTCATACTTGCCTATTGCGAGGGAGAAGCCTTCTGTTGAACTTGTGAAGGTCACAGACGAGATGAAGTCATTCAAAGCTTATTACAAGCTTAGACTTGAACGCACAAACAAACGCCATTATGGTGCTAGACTGAAGAAGGCTGCCGAAGCTGAAAAGGAAGACAAAAAGTGA 624 0.4663 MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKGAGIPKKLAPTIGIAVDHRRKNRSLESLQTNVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIAREKPSVELVKVTDEMKSFKAYYKLRLERTNKRHYGARLKKAAEAEKEDKK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01132 207 Gene3D - 167 207 - -
Spst2g01132 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Spst2g01132 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Spst2g01132 207 FunFam 60S ribosomal protein L13 166 207 - -
Spst2g01132 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Spst2g01132 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01132 Spst-Chr2 9995387 9996463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01132 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 87.958 7.09e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01132 K02873 - gmx:100805957 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01132 2 9995387 9996463 Spst3g03637 3 86399805 86400889 PCT