Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01116 ATGTTCGGTGGCGGAGGGGACGATGCGCTGGCAGCGCGGCTTGGCATGGTGTCGCCGTCGCTGCTGAACCAGGCGACACCGCCGGCGATGTCCGGCGAGGTGTCGGTCGCTGTGAGGGAGGAGAGGGGACCGCCGCAGCCTCAGTGGAGCCAGCAGGAAACGCGGGAGTTCATAGCGATACGCGCGGAGCTGGAGAGGGACTTCACTGCGTCGAAGCGAAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTTCAGGAGAAGCCCTGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGACCCAGAGCATAGCAGGCAATGTCCATTTTTTGAAGAATTGCATGCAGTCTTTACCCAGAGGGCACATAATATGCAACGATTACTTCTTGAATCTGAAAATCGCTCAGCTCAACCCAAGAAAGGAGTGAAAAGATTAAGTGAAGACAGGTCCTCAGAGGAACCCTCAGAGGACGATGATGAGGTTGAATATGACAGCGATGAGGAGAAACCTCCTAGAAGCAACACCCGCAAAAGGAAAGTTGGAATGGATAAGTCTTCTTCAAGGGCTAATAATCCATCAAATGCTGCCAGTAATAGTACTAGTAGTATTCAGGAACTGCTAAAGGATTTTTTCCAGCACCAGTTAAGGATGGAAATGCAGTGGAGGGAGATGATGGAGAAGCGTGCTCATGAAAGACAGTTGTTTGAACAGGAATGGAGGCAGTCCATGGAGAAGCTTGAGCGGGAGAGATTAATTATTGATCAGGAATGGAGGGAGAGGGAAGAACAGAGGAGAATGAGAGAAGAGAGTAGGGCAAAAAGCAGGGATGCTCTGTTGACAACCCTTTTGAACAAACTCATTAATGAATCTAACTAA 921 0.4962 MFGGGGDDALAARLGMVSPSLLNQATPPAMSGEVSVAVREERGPPQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHSRQCPFFEELHAVFTQRAHNMQRLLLESENRSAQPKKGVKRLSEDRSSEEPSEDDDEVEYDSDEEKPPRSNTRKRKVGMDKSSSRANNPSNAASNSTSSIQELLKDFFQHQLRMEMQWREMMEKRAHERQLFEQEWRQSMEKLERERLIIDQEWREREEQRRMREESRAKSRDALLTTLLNKLINESN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01116 306 MobiDBLite consensus disorder prediction 21 52 - -
Spst2g01116 306 Pfam Myb/SANT-like DNA-binding domain 47 130 IPR044822 -
Spst2g01116 306 Gene3D - 49 110 - -
Spst2g01116 306 MobiDBLite consensus disorder prediction 200 216 - -
Spst2g01116 306 ProSiteProfiles Myb-like domain profile. 49 105 IPR001005 -
Spst2g01116 306 SMART sant 45 107 IPR001005 -
Spst2g01116 306 MobiDBLite consensus disorder prediction 181 199 - -
Spst2g01116 306 CDD GT1 47 112 - -
Spst2g01116 306 PANTHER FI21293P1 39 302 - -
Spst2g01116 306 MobiDBLite consensus disorder prediction 151 166 - -
Spst2g01116 306 FunFam Zinc finger and SCAN domain-containing 20 49 110 - -
Spst2g01116 306 MobiDBLite consensus disorder prediction 144 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01116 Spst-Chr2 9795778 9797728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01116 21 301 Trihelix Transcription Factor Family AT2G38250 43.509 6.84e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst2g01116 Myb_DNA-bind_4 5.4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01116 - - gmx:100812635 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01116 2 9795778 9797728 Spst2g01116 2 9795778 9797728 ECH