Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01030 ATGAGTGATGCAAAAGAAAACGAGGAGGCTGACCAGGGCCTGCCCTCGGTCTTGGCAGAGAACCAACAGTTGGTTGATGCAAAGGATCGAGTTCAACCTGAAGCTGCTTCTGCTCCTGTTGCAGTAGATGAAACGTCAAACCTTGTCGAAAATGGGTCAAATCATGTTGAAAGTGGGTCAAATCAGGCTGAAAAGAAGAAGGAAGAGCCACTTGTTGAGGATAAAAACGTGGAACTTGAGGCTGTTTCACAAGGCATTCCACAAGAGGATGTTCAAGATACTCTTCATTCTGTTCCAGTAGAGGCTCATACTCAGATTTTGGAGAGGACTGAGTGTGAAGAAGCTTGTACTACGAAGGGGGAGGCTGAAGGATTTCCCACAAATAATAAGAAGGTGGAGAATACTGATGGTATTCATCAAAATAGTATTGATGTTGTTGAAATGGCTGTGGAAGTGAAGCCTGAGGGCTGTGGAATGGTTGATAGTAAAACTTGTGACAATGATGGTGACCCTATGCCTACAAGTCATGATGAGCCTGTTATTTCACAACCTGCTCCTACTGATATAAACACTGAAGTTGTGAATGTATTAGAAGTTGAGAATAAGGCTGATGAAAAGGAAGCTACTGACCCTGCTGATAATGGTAATTCAAATTCAAAGCACTTGTTTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACAGAGGAGGAGCAGTCAGCCTTTATGAAGGAGATTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACATCCCAAGTTTTATGGAGAAGGATTAAATTGCCTCAAGCTGTGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTAACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTGAACGTGCCTATTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGGCATCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGGAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTGCAAAAACGTGAAAAGCAGATTAAAAGCATCAATTTACACAAACGTAAGAAACCATCTTCACCTTACATGGATAACGCAGTCAAAGCTGCTCGCAGTAAACCATCAAAACCACAATTGGACACATCTGTGATTGACATAGGACCTCCTGCTGATTGGGTGAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGTGAAGAGGTTCGTGTACAGTCAGATCCAGCAGGACGCCTTGTCATTAGCGGTGAACCTGAGCATCCCAGCAATCCTTGGGGTGTGACACCATTCAAAAAGGTCGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCGGCGGTGGTAACGCTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACAATCAGAATAG 1608 0.4366 MSDAKENEEADQGLPSVLAENQQLVDAKDRVQPEAASAPVAVDETSNLVENGSNHVESGSNQAEKKKEEPLVEDKNVELEAVSQGIPQEDVQDTLHSVPVEAHTQILERTECEEACTTKGEAEGFPTNNKKVENTDGIHQNSIDVVEMAVEVKPEGCGMVDSKTCDNDGDPMPTSHDEPVISQPAPTDINTEVVNVLEVENKADEKEATDPADNGNSNSKHLFFLDADHSYDGNESGTEEEQSAFMKEIENFFRERSMEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIASHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQIKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTSVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPSNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01030 535 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 47 534 IPR045147 GO:0006357
Spst2g01030 535 SMART bright_3 240 331 IPR001606 GO:0003677
Spst2g01030 535 SUPERFAMILY HSP20-like chaperones 444 531 IPR008978 -
Spst2g01030 535 FunFam AT-rich interactive domain-containing protein 3 239 338 - -
Spst2g01030 535 CDD ACD_sHsps-like 450 530 - -
Spst2g01030 535 SMART ARID_2 236 326 - -
Spst2g01030 535 Gene3D - 438 535 IPR008978 -
Spst2g01030 535 MobiDBLite consensus disorder prediction 44 59 - -
Spst2g01030 535 Pfam ARID/BRIGHT DNA binding domain 242 326 IPR001606 GO:0003677
Spst2g01030 535 Gene3D - 239 336 IPR036431 GO:0003677
Spst2g01030 535 CDD ARID 241 326 - -
Spst2g01030 535 MobiDBLite consensus disorder prediction 387 437 - -
Spst2g01030 535 ProSiteProfiles ARID domain profile. 239 330 IPR001606 GO:0003677
Spst2g01030 535 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 435 535 IPR002068 -
Spst2g01030 535 FunFam AT-rich interactive domain-containing protein 3 427 535 - -
Spst2g01030 535 Pfam Hsp20/alpha crystallin family 452 534 IPR002068 -
Spst2g01030 535 SUPERFAMILY ARID-like 234 342 IPR036431 GO:0003677
Spst2g01030 535 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01030 Spst-Chr2 8980421 8986490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01030 223 533 ARID Transcription Factor Family AT1G76510 62.342 6.99e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst2g01030 HSP20 1.8e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01030 - - gmx:100791081 883.634