Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01020 ATGCAGTGGTCAAATGTAGATGATATCTGTATCATTGATTTTATGGACTTGGGTCACCGCAGTAACAACAACAACTATACGTATAGTGGAGTTCGAAGATCAACTGAAGATGTTGGTGTTTCTATCTTTGATTTCATGAACACGGGTCATGACAACATGGAAAATGACAGAGTTTTAAGGTCAATTGAAGAGGGTGTTTATATCATAGATTTTGTGAACTCAGGTCACAACAACAACAACGTGCAAAACAATGGTAGTAGAATTTCAAGATCAACCGAAGATGGTGTTTTTATCTTTGATTCCATGAACTTGAATGAGATCCATTATACAGAGAATAATGTTGGAGTTTTAAGCATGAACCTTGCAAACCATGACTCTGTTAGGAATCTTGAAAGTTTCACAGTTGAAGAAAAAACAGAAGACTCTTGTTCAATTTGTCTCATGGAACTTTCATTTGGATCAAGAGCAATTCGCATGCCTCACCCGTGTTCTCATATCTTTCATCAACACTGCATCACAAGGTGGCTCAACATCAGTCACACATGTCCTCTATGTCGGAGGACCATCTAG 570 0.3807 MQWSNVDDICIIDFMDLGHRSNNNNYTYSGVRRSTEDVGVSIFDFMNTGHDNMENDRVLRSIEEGVYIIDFVNSGHNNNNVQNNGSRISRSTEDGVFIFDSMNLNEIHYTENNVGVLSMNLANHDSVRNLESFTVEEKTEDSCSICLMELSFGSRAIRMPHPCSHIFHQHCITRWLNISHTCPLCRRTI 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01020 189 Pfam Ring finger domain 141 186 IPR001841 -
Spst2g01020 189 ProSiteProfiles Zinc finger RING-type profile. 143 186 IPR001841 -
Spst2g01020 189 SMART ring_2 143 185 IPR001841 -
Spst2g01020 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 189 IPR013083 -
Spst2g01020 189 SUPERFAMILY RING/U-box 132 189 - -
Spst2g01020 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 82 187 - -
Spst2g01020 189 SMART ringv_2 142 186 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01020 Spst-Chr2 8870112 8870681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01020 136 186 C3H Transcription Factor Family AT1G14200 49.020 1.16e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01020 - K22753 pvu:PHAVU_007G097900g 133.265