Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01017 ATGACGCGCATACTCAGAATTCTCAAGTCCGCGGACAACGCCAAGGCGGTGACTACGGCGGCGCCGCCGCCGGAGGCGGTCGCCCTTGAGTCCGATTTCGTCGTGATTCTGGCGGCTCTCCTGTGCGCTTTAATCTGCGTGGTGGGACTCGTGGCAGTGGCGCGGTGCGCATGGCTCCGGCGAGGGCCCGGCGGCGGGAACTCGCCGCGGCAGGCTTTGGCGAACAAGGGCCTGAAGAAGAAGGTGCTGCAGTCGCTGCCGAAGTTCGCTTACGTGGACAGCAACCCGAGCAAGTGGGTGGCGACGTCGGAATGCGCGATTTGTCTGGCGGAGTTCACCGCCGGCGATGAGATCCGCGTGCTGCCGCAGTGCGGCCACGGCTTCCACGTGCCCTGCATCGACACCTGGCTAGGATCCCACTCCTCCTGCCCTTCATGCCGCCAGGTCCTCGCCGTCGCCAGGTGTCAGAAGTGCGGCCGCTTTCCGGCCACACCCGCCGGAGCCTCCAGAACCTCAGGAACCGAACCCGAATTGAAGTCCGGAGAAGACAACAATGCCGCTTCTATCAGTAATTGCAGCAATAACAACAGTGATGGCGGTGGAAGTGGAAATCACGTGAATCATCATCACGGCCACCATGTGAACAATGGGTTCTTGCCCTGA 663 0.6229 MTRILRILKSADNAKAVTTAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGPGGGNSPRQALANKGLKKKVLQSLPKFAYVDSNPSKWVATSECAICLAEFTAGDEIRVLPQCGHGFHVPCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATPAGASRTSGTEPELKSGEDNNAASISNCSNNNSDGGGSGNHVNHHHGHHVNNGFLP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01017 220 CDD RING-H2_EL5-like 104 147 - -
Spst2g01017 220 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 24 159 - -
Spst2g01017 220 FunFam E3 ubiquitin-protein ligase ATL6 67 153 - -
Spst2g01017 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Spst2g01017 220 SMART FANCL_C_2 101 155 - -
Spst2g01017 220 SUPERFAMILY RING/U-box 84 152 - -
Spst2g01017 220 SMART ring_2 105 146 IPR001841 -
Spst2g01017 220 MobiDBLite consensus disorder prediction 167 203 - -
Spst2g01017 220 Pfam Ring finger domain 104 147 IPR001841 -
Spst2g01017 220 MobiDBLite consensus disorder prediction 164 220 - -
Spst2g01017 220 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01017 Spst-Chr2 8830017 8830679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01017 28 184 C3H Transcription Factor Family AT1G20823 61.310 1.90e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01017 - - gmx:100787383 333.954