Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00984 ATGGCTTCATCAATGGAGTATGCAGGTGGAATGGGAGAACCGCTTTACCGCTACAACGAGACAACGTTAGTGTTGAACGAACGTAACAGCTACAATGTGATGATGTTTGGGTCGAATGAGTACGCTACGATGATTCCTGGTGGTGTTTTCAGAATCAGCATTAAAGTTAATCATAATATGCGTAGAAGGCTATTACTGTATAGCCCTGCCAGTTCCATACCTTGCCAAAGCTTCTTCCAAGAGGGTAAAGATTTCTTGCGGACACTGTTGGCGCCACTGTCGCCAAGACTCTTCTGCTCTGTAATTATTGATGAAATAGTGGAGTTGATCGCTTCTGAAGTTTGTAATCTCTTCCAAGTAGATGCTGCTTCCGCTTCTGCTTCCTTTTCTTCGGAATCTCAACCCCCAGAAATCCCTTTGTGGATTGTAATTAGGGTTTCTGATACTGGCTTTCTTGCATCACTACAAGATTTCACGACGCTTCGTTTGGAAACGGTTCCAGCATCGAAAGAAGCCATTGAAACGTTGTTGAAGAATTGTAGGGTTATGGTAGCGGGTGAGTGTTGTTGTGTATGCTTGGAAGAGTTTGATGTGAATGGTGAGTGCCATAGAATGCCATGTCATCACTCGTTTCATCAACCTTGTATAGTCCACTGGCTGCAAACCAGTCACACGTGTCCATTATGTCGCTACCCTTTGCCAACAATGAACTAG 714 0.4412 MASSMEYAGGMGEPLYRYNETTLVLNERNSYNVMMFGSNEYATMIPGGVFRISIKVNHNMRRRLLLYSPASSIPCQSFFQEGKDFLRTLLAPLSPRLFCSVIIDEIVELIASEVCNLFQVDAASASASFSSESQPPEIPLWIVIRVSDTGFLASLQDFTTLRLETVPASKEAIETLLKNCRVMVAGECCCVCLEEFDVNGECHRMPCHHSFHQPCIVHWLQTSHTCPLCRYPLPTMN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00984 237 SUPERFAMILY RING/U-box 188 235 - -
Spst2g00984 237 SMART ring_2 189 229 IPR001841 -
Spst2g00984 237 Pfam Ring finger domain 189 230 IPR001841 -
Spst2g00984 237 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Spst2g00984 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 236 IPR013083 -
Spst2g00984 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00984 Spst-Chr2 8447143 8447856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00984 153 234 C3H Transcription Factor Family AT1G18760 35.714 1.10e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00984 - - vum:124843592 201.445