Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00979 ATGGATAATGAAAACAAGGAAGAAGAGAGTAGTGAAGGGGAAGCAATGGATGGGGTTGAAATGGTGCAGAAGATAAGAATAAAGTTAGTGGGTGGTGATGGGGAGGGTTCAAGAACAGGGTCATCATCTTCTACCCAGAGTTTCTGTCAGGCAGATGAATGTGGTTTGAACTTGAACATGGCCAAGAGTTACCATCGCCGTCACAAGGTTTGTGAGAGACATTCTAAGGCTCCTGTTGTTTTAGTTTCTAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAAGTTGCACAGTTTGATGAGAACAAAAGAAGTTGCAGGAAAACATTGGCTGGACATAATGAACGAAGAAGAAAACCTAGCACAGACATGTCCTTAGGAGATGATCATCATCTTACACATGGTCATCTAAATTGA 426 0.4225 MDNENKEEESSEGEAMDGVEMVQKIRIKLVGGDGEGSRTGSSSSTQSFCQADECGLNLNMAKSYHRRHKVCERHSKAPVVLVSSIRQRFCQQCSKFHEVAQFDENKRSCRKTLAGHNERRRKPSTDMSLGDDHHLTHGHLN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00979 141 ProSiteProfiles Zinc finger SBP-type profile. 46 123 IPR004333 GO:0003677
Spst2g00979 141 MobiDBLite consensus disorder prediction 113 141 - -
Spst2g00979 141 Pfam SBP domain 49 122 IPR004333 GO:0003677
Spst2g00979 141 Gene3D - 39 110 IPR036893 GO:0003677|GO:0005634
Spst2g00979 141 SUPERFAMILY SBT domain 48 127 IPR036893 GO:0003677|GO:0005634
Spst2g00979 141 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 126 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00979 Spst-Chr2 8412482 8413110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00979 35 126 SBP-box Gene Family AT2G33810 55.435 9.72e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst2g00979 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00979 - - vum:124835315 176.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00979 2 8412482 8413110 Spst2g00979 2 8412482 8413110 ECH