LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g00961	ATGGTGATCGAGCATGACATTGAGAGCTGCGGGAGCAGAGCGGTGCAGTCGTCGCACGTTAACCACCCTCGCCACCACCGCCAGAAACTGGAGGTGTACAATGAGGTGCTGCGACGTATTCAGGAGTCCGATTGCGAGGAGGCGCACGTTCCCGGCTTCGACGATCAGCTTTGGCTTCACTTCAATCGCCTTCCCGCTAGGTACGCGTTGGATGTGAATGTGGAGAGGGCAGAAGATGTTCTAGCTCATAAGAGATTGCTCAAGTTGGCGGAGGATCCTGCTTCTCGACCTGCATTTCAAGTCCGCTTAGTACAGGTATATCCTTTTGGTGGTACAAATTATGCTGATTCCATACATTCAGATCCTTCTGAGATAGAGGATGCACAGAGTTCTCTTAACTATTCTTTAAAGCAGGGAATTCATCCACCACCTACATTTGGTTCATCCTCTAATCTTGAAGCTCTTGCACTTCAAACAACCAAGAATAACATTGAAGATGGGGGAAGTGCTATGAGTGTAACACCATATTTTCACAGATTAGATAGAGAACTTATGAAGTTAACATCAATACTTGGTGAGATGGGACTGAATATTCAAGAAGCTCATGCATTTTCCACCACTGATGGATTTTCTCTGGATGTCTTTGTTGTTGAAGGATGGCCTAATGAGGAAACTGAGGAGCTGAAAGGTGTGTTGGAAAAGGAAATTTACAAGGTTAAGGAGCAAAATTTGTCAAATCAGGGCATACATTATGCCGCCACTGAACATTGCCAGGCAAGGATCGAACCATCCCCTCCTTGCATTCAAATACCATCAGATGGAGCTGATGTCTGGGAACTTGATACCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTCGGTGACTTTCAAGATGTTGCTATCAAAGTTCTCAAGCCTGAGCGCATAAGTACAGATATGCTGAAGGAGTTTGCACAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTTGTTCAGTTCATTGGCGCATGTACTAGGCCCCCAAATCTTTGTATTGTTACTGAGTTTATGTCTAAGGGAAGCTTATATGACTTTCTGCACAAACAAAGAGGTGTATTTAAGCTTCCATCTTTGCTAAAAGTAGCAATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTCAAGGTTGCTGATTTTGGGGTTGCTAGAGTGCAAACTCAGTCTGGAGTGATGACAGCTGAAACTGGAACATACCGTTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCGGATGTTTTCAGTTTTGGAATAGCTCTCTGGGAGCTTTTAACTGGAGAACTACCTTACTCTTGCTTGACCCCATTACAAGCAGCAGTTGGCGTGGTGCAGAAGGGCCTACGGCCAACAATTCCAAAAGCCGCACACCCAAGACTTTCTGAACTGCTCCAGCGGTGCTGGCAACAAGATCCGACTCTCAGACCAGATTTCTCTGAAATAATAGAAATTCTTCAGCACATAACAAAAGAGGATGGATACATGATTAGTGAAGTATCAGATTACCACTGTCTTGGTGAAGTGTTTCTGCGACTCCTCCCAAAACTTATTCTATATACAGCTGCAGGTCCAACAGGAACACTTCATTGTTCTGTTGGAAGTCCATTTTGTGTCCAAGCTGCATAA	1752	0.4412	MVIEHDIESCGSRAVQSSHVNHPRHHRQKLEVYNEVLRRIQESDCEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKRLLKLAEDPASRPAFQVRLVQVYPFGGTNYADSIHSDPSEIEDAQSSLNYSLKQGIHPPPTFGSSSNLEALALQTTKNNIEDGGSAMSVTPYFHRLDRELMKLTSILGEMGLNIQEAHAFSTTDGFSLDVFVVEGWPNEETEELKGVLEKEIYKVKEQNLSNQGIHYAATEHCQARIEPSPPCIQIPSDGADVWELDTNQLKYENKVGSGSFGDFQDVAIKVLKPERISTDMLKEFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSKGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSCLTPLQAAVGVVQKGLRPTIPKAAHPRLSELLQRCWQQDPTLRPDFSEIIEILQHITKEDGYMISEVSDYHCLGEVFLRLLPKLILYTAAGPTGTLHCSVGSPFCVQAA	583

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g00961	583	CDD	STKc_MAP3K-like	291	527	-	-
	Spst2g00961	583	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	199	530	-	-
	Spst2g00961	583	SUPERFAMILY	Protein kinase-like (PK-like)	276	537	IPR011009	-
	Spst2g00961	583	PRINTS	Tyrosine kinase catalytic domain signature	352	365	IPR001245	GO:0004672\|GO:0006468
	Spst2g00961	583	PRINTS	Tyrosine kinase catalytic domain signature	454	476	IPR001245	GO:0004672\|GO:0006468
	Spst2g00961	583	PRINTS	Tyrosine kinase catalytic domain signature	435	445	IPR001245	GO:0004672\|GO:0006468
	Spst2g00961	583	PRINTS	Tyrosine kinase catalytic domain signature	389	407	IPR001245	GO:0004672\|GO:0006468
	Spst2g00961	583	PRINTS	Tyrosine kinase catalytic domain signature	498	520	IPR001245	GO:0004672\|GO:0006468
	Spst2g00961	583	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	395	407	IPR008271	GO:0004672\|GO:0006468
	Spst2g00961	583	Gene3D	Transferase(Phosphotransferase) domain 1	357	547	-	-
	Spst2g00961	583	ProSiteProfiles	Protein kinase domain profile.	285	532	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst2g00961	583	SMART	serkin_6	285	532	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst2g00961	583	ProSiteProfiles	ACT domain profile.	172	247	IPR002912	-
	Spst2g00961	583	Gene3D	Phosphorylase Kinase; domain 1	275	356	-	-
	Spst2g00961	583	Pfam	Protein tyrosine and serine/threonine kinase	300	527	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g00961	Spst-Chr2	8262504	8276038	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g00961	2	535	MAP Kinase Kinase Kinase	AT4G35780	67.509	0.0	732

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Spst2g00961		PK_Tyr_Ser-Thr	7.5e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g00961	-		-	gmx:100816767	1000.73