Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00956 ATGTTCCCTTTCTCAATCCATTCCTCTAAATCAGATTCTTATGACTTACCCTTGGTATATAACCTTGTTGTGGTGTTGACATCGGACCTTGATCTAGGATTTGATTTTCTCGTCCTTGGCGAGAATCTGGGGATGATCATTGAGATCCACCAAGGATCCCTGAATTCAAGCCATAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGGTCCAGGTCAAGGTCTAGGTCTAGGCCTAGGTCTAGGTCCCGGTCAAGATCATTTGAAAAACAAAGGCCAAGATCCCGCTCAAGAAGTCGAGGAAGATCAAGGTCGAGAAGTAATGAAAGGTCTGAGTCTAGAAATTCAGGGAATACACTTTATGTCACTGGCCTTTCTTCGAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAAGAGGGGAAGGTTGCATCATGTTTTCTTGTGGTGGAGCCTCGCACTCGCATTTCGCGTGGTTTTGCTTTTATCACAATGGATAATGTTGAAGATGCTAACCGCTGTATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAACGTGCAAGAACTCCTACACCTGGGCACTATCTTGGTCTGAAAAGTACTAGAGATTATGCTGATTGTCTCAAGGATATCGCGGTGACCGAGGAAGGTATCGGGGAGGGGGAGGTGGGGGAGGTGGGGGATCTGGTCGTGAAGATTATGCATATCGTGGTGAGCGTGGAAGGTCTCCAAGGCGCTCGCCATATCGAGGTGGTAGAGACTATTCGCCAAGGCATTCACCGCCACCTTATGCTGGAAGATCTAGGAGGGATAGGTCCAGGTCACTTCCATATTCTCCATATGGTAGCCCAGACAGGAGGTATGCCCGTGGATCTAGGTGATCTCTTTTGCAGCTTGTTCCACCTTTAA 951 0.4763 MFPFSIHSSKSDSYDLPLVYNLVVVLTSDLDLGFDFLVLGENLGMIIEIHQGSLNSSHRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSNERSESRNSGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDNVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYADCLKDIAVTEEGIGEGEVGEVGDLVVKIMHIVVSVEGLQGARHIEVVETIRQGIHRHLMLEDLGGIGPGHFHILHMVAQTGGMPVDLGDLFCSLFHL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00956 316 SUPERFAMILY RNA-binding domain, RBD 115 213 IPR035979 GO:0003676
Spst2g00956 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Spst2g00956 316 MobiDBLite consensus disorder prediction 53 72 - -
Spst2g00956 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Spst2g00956 316 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 113 235 - -
Spst2g00956 316 MobiDBLite consensus disorder prediction 53 126 - -
Spst2g00956 316 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 55 204 - -
Spst2g00956 316 SMART rrm1_1 121 194 IPR000504 GO:0003723
Spst2g00956 316 Gene3D - 54 204 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00956 Spst-Chr2 8217367 8219848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00956 91 202 Eukaryotic Initiation Factors Gene Family AT1G49760 27.679 2.99e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00956 K12897 - gmx:100527350 224.942