Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00945 ATGGAGTTTGTGCCAAATCCATGTCCTTTGCGTTCAGCTTCGCTCGGGAATCTCGTCGAGAGGGTTAAGCAGCTTGGTACCCTTGCCGTCTCTGCCGTCATTGGGAACATATTCTCTGCGATCTTGACCTTTTGCTTCGCATTAGTGGGCACTTTGTTGGGGGCCTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCGGTTGGTGCCATATCAGGAGCTGTATTTTCCATTGAAGTGTTTGAATCATCTCTTGTCCTTTGGCAATCTGACGAATCTGGAATTGGTTGCGTGTTATATTTGATTGATGTCATCGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCAGCCATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTGCCAAAGGTTTATCTGGAGATTTGGTTGAAAAAATCCCAAAAATCAAAATTACAACTGACAACAATATTGATGCATCCGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTCAGCTTGGAGAAACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 699 0.4564 MEFVPNPCPLRSASLGNLVERVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDTGGAKGLSGDLVEKIPKIKITTDNNIDASGDRVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00945 232 SMART ring_2 187 228 IPR001841 -
Spst2g00945 232 Pfam Ring finger domain 186 229 IPR001841 -
Spst2g00945 232 SUPERFAMILY RING/U-box 174 232 - -
Spst2g00945 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 231 IPR044523 -
Spst2g00945 232 CDD RING-H2_NIPL1-like 186 229 - -
Spst2g00945 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Spst2g00945 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Spst2g00945 232 FunFam NEP1-interacting protein-like 1 147 232 - -
Spst2g00945 232 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00945 Spst-Chr2 8123269 8125200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00945 17 232 C3H Transcription Factor Family AT5G66070 77.315 2.05e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00945 - - gmx:100807641 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00945 2 8123269 8125200 Spst3g03755 3 87551541 87560347 PCT