Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00900 ATGAAAATTCCGTTCTGTGCCACTGGTTCAAACATATTAATAAAATGGTTTCCTATAAAAAAGTCAAGTGTGGTGGGTATTAATGGTGGTGGTGAATTTGATGCAGTACCAGTATTTGCTATGATGGAGTCGATGGAGTCATGTGTCCCACCGGGTTTTCGATTCCACCCAACAGATGAAGAGCTTGTTGGTTACTATCTGAGGAAAAAAGTGGCTTCTCAAAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGATAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTTTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACTATGGCGGGCTTTTGGAAGGCTACAGGAAGAGACAAAGCAGTTTATGACAAGACAAAACTAATTGGGATGAGGAAAACCCTTGTCTTCTACAAAGGAAGAGCCCCTAATGGACAGAAATCTGACTGGATCATGCACGAGTACAGGCTTGAATCAGATGAGAATGGACCTCCACAGGAGGAAGGATGGGTTGTGTGCAGAGCCTTCAAGAAGAAAACAACTGCACAAACAAAGAGTATTGAAGGATGGGACTCAAGCTACTTTTTTGAGGAAGCAAGTGGGGTAAGCAGTGTGGTGGATCCAATCGATCTCATTTCAAGGCAGTCTCAGAGCTTTTTAGCTCAAAATTTCATTTGTAAGCAAGAGATAGAAGCAGATAACTTGAGTTGCATGCTCCAAGACCCATTTGTACAACTTCCGCAGCTAGAAAGCCCTTCTTTGCCATTAGTGAAGAGGCCAAGCACAGTGTCACTAGTATCAGACAATAACGAAGATGAAGACATTCAAAACAGGTTATTCAACAACGACACAAAGAAAGTAACGGATTGGAGAGCTCTTGACAAGTTTGTAGCCTCTCAACTGAGTCAAGAAGACACGCATGCAACCAACGGACTCTCAAGCTTTGAACCCAATGATAGCCAAGACATGGCACTGCTACTACTGCAGAGTAGTAGGGATGACGGGAACAGGCTAAGCCCGTTTCTAAACACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1134 0.4259 MKIPFCATGSNILIKWFPIKKSSVVGINGGGEFDAVPVFAMMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTAQTKSIEGWDSSYFFEEASGVSSVVDPIDLISRQSQSFLAQNFICKQEIEADNLSCMLQDPFVQLPQLESPSLPLVKRPSTVSLVSDNNEDEDIQNRLFNNDTKKVTDWRALDKFVASQLSQEDTHATNGLSSFEPNDSQDMALLLLQSSRDDGNRLSPFLNTSSDCDIGICVFEK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00900 377 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 46 292 - -
Spst2g00900 377 Pfam No apical meristem (NAM) protein 50 177 IPR003441 GO:0003677|GO:0006355
Spst2g00900 377 ProSiteProfiles NAC domain profile. 49 198 IPR003441 GO:0003677|GO:0006355
Spst2g00900 377 SUPERFAMILY NAC domain 41 198 IPR036093 GO:0003677|GO:0006355
Spst2g00900 377 Gene3D NAC domain 58 203 IPR036093 GO:0003677|GO:0006355
Spst2g00900 377 FunFam NAC domain-containing protein 58 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00900 Spst-Chr2 7664174 7667143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00900 42 376 NAC Transcription Factor Family AT2G18060 65.217 2.28e-164 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst2g00900 NAM 6.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00900 - - pvu:PHAVU_002G110900g 664.455