Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00898 ATGGAGGATATATCGAAATACGCGCACAGTCCTGCACACGTGGCAGTAGCGAGGCGTGACCATGCCGCACTGTGCCACCTCGTTTCCTCCATTCCTCGACTCGCCAAAGCCGGTGAGGTAAACACTGAAGCTGAATCGCTCGCGGCGGAGCTCAAAGCCGACCAGGTGTTCGCGGTTATCGACCGCTGCGACGTTCCAGGAAGAGAAACCTCTCTCCACCTGGCGGTGCGTCTCAGAGACACTGTCTCCGCCGAGATTCTCATGTGTGCTGGTGCGGATTGGAGTCTTCAGAACGAGCACGATTGGAGTGCGCTCCAAGAAGTCGTGTGCACTAGAGAGGAAGCCATTGCAGTGATCATCGCGCACCACTACCAGCCTCTTATATCTCTCTGCCACCTTGGAAATCTTCATGCCACACTTTCCACCAATGGCATGCAATTTTATATCCAGCAGAGATTGCCCGCTTCACTATTTATATCACCATGTATTCGATCGGAGATGTCTGCTGTTGCCGCCGGAGAAACTACCGCTCCCGCCGTGGAAAAGCCAGTGGAGGAGGTTAAGGCGCCGAAGGAAAAAAAACCTAAGGCTCCTAAAGAGAAGAAACCGAAACAGGCTAAAACTGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGGTGGCGCTGAACGAGAAAGGAGGATCGAGCCCGTACGCTATAGGTAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTGGGTCTGCAATTGAAGAACCAAGCGGCAAGAGGGAAACTCGTTAAGATCAAGGCTTCGTACAAGCTGTCCGAAACCGCAAAGAAGGAAAAGAAGGAGACAAAAGCCAACACCGAGAAGACAGAATCGCGTCCGAAACGAAGCAGAACCGCAACCACCAGAAACGCAACCACCGCTGCTCCGACGAGCAAGAAAACCGAGGCGATTAAAAAGGCCAAGAAGAAGGTTGGGCCGAAGAAGAGTAAGAAGGTGACTACACCCGCGAAGCCCAAACAGCCCAGGTCCATTAGGTCTCCGGCCAAGAGGGCCCGGAAGGCTACCAGTACTGCGGCTTGA 1101 0.5286 MEDISKYAHSPAHVAVARRDHAALCHLVSSIPRLAKAGEVNTEAESLAAELKADQVFAVIDRCDVPGRETSLHLAVRLRDTVSAEILMCAGADWSLQNEHDWSALQEVVCTREEAIAVIIAHHYQPLISLCHLGNLHATLSTNGMQFYIQQRLPASLFISPCIRSEMSAVAAGETTAPAVEKPVEEVKAPKEKKPKAPKEKKPKQAKTASHPPYFQMIKEALVALNEKGGSSPYAIGKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIKASYKLSETAKKEKKETKANTEKTESRPKRSRTATTRNATTAAPTSKKTEAIKKAKKKVGPKKSKKVTTPAKPKQPRSIRSPAKRARKATSTAA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00898 366 MobiDBLite consensus disorder prediction 323 342 - -
Spst2g00898 366 SUPERFAMILY "Winged helix" DNA-binding domain 207 290 IPR036390 -
Spst2g00898 366 FunFam Histone H1 206 297 - -
Spst2g00898 366 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 210 280 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst2g00898 366 Coils Coil 279 299 - -
Spst2g00898 366 Pfam linker histone H1 and H5 family 211 277 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst2g00898 366 SUPERFAMILY Ankyrin repeat 68 126 IPR036770 -
Spst2g00898 366 CDD H15 208 279 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst2g00898 366 MobiDBLite consensus disorder prediction 305 319 - -
Spst2g00898 366 Gene3D - 2 125 IPR036770 -
Spst2g00898 366 Gene3D - 205 295 IPR036388 -
Spst2g00898 366 PRINTS Histone H5 signature 197 218 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Spst2g00898 366 PRINTS Histone H5 signature 224 241 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Spst2g00898 366 PRINTS Histone H5 signature 337 354 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Spst2g00898 366 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13 3 128 IPR021832 -
Spst2g00898 366 MobiDBLite consensus disorder prediction 280 304 - -
Spst2g00898 366 SMART h15plus2 208 275 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst2g00898 366 MobiDBLite consensus disorder prediction 181 211 - -
Spst2g00898 366 MobiDBLite consensus disorder prediction 280 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00898 Spst-Chr2 7652001 7656410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00898 198 280 Single Myb Histone (SMH) Gene Family AT1G72740 37.349 1.32e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00898 K21437 - gmx:100801892 216.468