Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00895 ATGCAGCGTGCAAGGAAACTGAAGAGGGTTTCGTGGGCTCCTGCATCTCATCTTTGTCAGGATAAGCATGCATTTTTCTGGATTGGTGAGCAAATGAGTGTGAATCATTTGCTTTCATTGGACTGTTTGGACCTGACAGACTATGATGCACTTGTAAAATTTTTCTTATCTGAGGACTGTCCTTCAAAAATTGGCAATAAATCTCAAGAGAAATCAAAGGCATTGTCCACATGGCCTTTAACTACCAATGAATATGGTGATTCATCACGCGGATTTGAAGGCAATCATTTCCAGAATCAATATTCAGAATTCTCTGAAATTTCTCAGATTAAATGGGAATGCCCTCCTTCGTTTGCTTTGAGTCATTGTTGGTGCGTTGCAGCTGGTGAAGAAAGTATGGAGAAATATGATCAAATGCTAAGAGAAATGAGAGTGTCTGAAGCATATTATCCTTGCACTACTGCCATTCCTCCTGGCCCTTTTGTTTCATTTAACGTGGAGAATGAATGTTATGATGATAGTCTTACTCCTGTCATCCCTCAGATTCACATTCAGGAATATGAATCAGTAACAGATATTAAATCTGATGTTTGTGTCAGAAAACATAGAGACTCTCCCTCCAATCTGGAGACACAAGCAGCATCTTCGGAGGCAAATTTAGTTGCAGCTTCTGCTGCTGCTGTTGTAGCTGCCATCTCAGAAAGCAATGAGAAAGTAACCGAAATTGATATGGATTTTCTCCTTACAATAGCTAATGACCCAATAGTGATTGGGAAATTAATCGAAGAATATTCAACTGTTACCACCACTGGGATCAGTACACCCTTAAGAACTGTGAGTGCAAGACAATCAACGTTGACCATGTCAGAAATTCAATCTATTCCATCTCTGGCAACTACACTTGATAAGCCTGCAACTCCACCTGTTCCTTTGTCTGGGCCTGTATCTGCTCTTGCAAGAAGTCCTACACCTCATGTGCACATGCCTGTGAAAAATCAATGTAAGAAACTTGTTAGAAAACATGGTGGTAATAGTAAGCAAGACATGCAGAATCATAATAATTTCCAAGATTTGAAACGTCCACGTGTCATTAATCCAGAGGAGGTGAAAATGAAAATTGAGAAACCTTGCAAATACTATAAAACTTCAAGGGGTTGTCGCAATGGTTCACGTTGCCGTTATCAACATGATATGTTAGTGTGGAGGATGTAA 1212 0.3985 MQRARKLKRVSWAPASHLCQDKHAFFWIGEQMSVNHLLSLDCLDLTDYDALVKFFLSEDCPSKIGNKSQEKSKALSTWPLTTNEYGDSSRGFEGNHFQNQYSEFSEISQIKWECPPSFALSHCWCVAAGEESMEKYDQMLREMRVSEAYYPCTTAIPPGPFVSFNVENECYDDSLTPVIPQIHIQEYESVTDIKSDVCVRKHRDSPSNLETQAASSEANLVAASAAAVVAAISESNEKVTEIDMDFLLTIANDPIVIGKLIEEYSTVTTTGISTPLRTVSARQSTLTMSEIQSIPSLATTLDKPATPPVPLSGPVSALARSPTPHVHMPVKNQCKKLVRKHGGNSKQDMQNHNNFQDLKRPRVINPEEVKMKIEKPCKYYKTSRGCRNGSRCRYQHDMLVWRM 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00895 403 ProSiteProfiles Zinc finger C3H1-type profile. 371 399 IPR000571 GO:0046872
Spst2g00895 403 SUPERFAMILY CCCH zinc finger 376 400 IPR036855 GO:0046872
Spst2g00895 403 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 331 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00895 Spst-Chr2 7615542 7618953 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00895 109 201 Homeobox Transcription Factor Family AT4G02560 38.710 1.98e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst2g00895 zf-CCCH 0.00012 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00895 - - vra:106776671 362.459