Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00894 ATGGAATGTTATGGTGATATCCTCACTCCTGATATCCCTCTCATTCCCGTTGAGGAGCAAGCATCGGTGGAAGATAAACATGATGATACAGTCACAAAATATGCAGAAAACGAATTGCAGACACAACTCTTGCAACAATATATTCCGCTAGCAAGATCTTCTTCGGAGGTAGATTTATTTGCAGCTTATGCTACTGTTGCAGCTGCCATCATGAAAAGAAATGAGGAACAATGCCTGATTGATACAAACTTCCTCCTTGAAACGGTTAATGACCCAATAAAAATTGGAAACTTAATTCAAGAATACATATCCACCACCTCCACTTTCAATACAGCTACACCTACAAGAACTGTTAGTATACCCACTTCTTGTTATGCACCTGCTACTTCATCAGTCCCATTGACTACCCCTGCAAGCAAAACAACTCCATTTGTTTCATTGCTCTCCCCCACACCTGAAAAATCAACAATTCCATCTGTTTCATTAGAGGTAACTACACTTGATAAGCCAGTAGCAACTGCTCCTTTGACTAAGCCTGCATCTACTGAAACAGAAACCACTAACACAGTAACAAAACGAGTGGAAAAGCCAGAAGCACCACTGCAAAACCAAAGACAAGAACACCTTGAATCCGATGCTAGTTCAGTGTCTTCTCAACGTTGCGTGAAAGATGTCAACTATTATATGAATCTTGTTAACGATCCTGATGATAATAAGAAAGACATGCGGAGTCGTAATAATTTTCGAGATTCGAAACAATCACGTAACAACACCACTAATCCGGAGGAGGAAAAATTCAAAATTCATAAACCATGCAAATATTTTAAAACTTCAAGGGGTTGTCGGAATGGTTCTAATTGTCGTTATGAACATGAAAGGTCAGTGTGGAGGATGTAA 897 0.3946 MECYGDILTPDIPLIPVEEQASVEDKHDDTVTKYAENELQTQLLQQYIPLARSSSEVDLFAAYATVAAAIMKRNEEQCLIDTNFLLETVNDPIKIGNLIQEYISTTSTFNTATPTRTVSIPTSCYAPATSSVPLTTPASKTTPFVSLLSPTPEKSTIPSVSLEVTTLDKPVATAPLTKPASTETETTNTVTKRVEKPEAPLQNQRQEHLESDASSVSSQRCVKDVNYYMNLVNDPDDNKKDMRSRNNFRDSKQSRNNTTNPEEEKFKIHKPCKYFKTSRGCRNGSNCRYEHERSVWRM 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00894 298 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Spst2g00894 298 SUPERFAMILY CCCH zinc finger 271 293 IPR036855 GO:0046872
Spst2g00894 298 MobiDBLite consensus disorder prediction 234 264 - -
Spst2g00894 298 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 3 294 - -
Spst2g00894 298 MobiDBLite consensus disorder prediction 171 218 - -
Spst2g00894 298 MobiDBLite consensus disorder prediction 231 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00894 Spst-Chr2 7613059 7613955 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst2g00894 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00894 - - pvu:PHAVU_002G110100g 402.905