Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00887 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATCGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGACATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATCCTGAAAATCCGTCTTCACAACCATTGGAACCTGGTGAAAGTAAAAGGGGACAAAATTCACTTTCCAAACTGAAAATGGGAGAGAAACAAAACCATGGAATGCCTCTGGGTCCAACGCCAGCACCTGATGCTGATGGACATACCAAGATGGAAACCAAAATGATTGATTTGAACATGAAGCCTAGTAGGATACATGAACAATCACCAAATAATCAGGTATTCAATAAATTGTCATAA 567 0.4339 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHPENPSSQPLEPGESKRGQNSLSKLKMGEKQNHGMPLGPTPAPDADGHTKMETKMIDLNMKPSRIHEQSPNNQVFNKLS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00887 188 SMART bboxneu5 51 96 IPR000315 GO:0008270
Spst2g00887 188 SMART bboxneu5 1 47 IPR000315 GO:0008270
Spst2g00887 188 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Spst2g00887 188 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst2g00887 188 Gene3D Classic Zinc Finger 2 91 - -
Spst2g00887 188 MobiDBLite consensus disorder prediction 104 188 - -
Spst2g00887 188 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Spst2g00887 188 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Spst2g00887 188 MobiDBLite consensus disorder prediction 156 170 - -
Spst2g00887 188 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Spst2g00887 188 FunFam B-box zinc finger protein 19 2 92 - -
Spst2g00887 188 CDD Bbox1_BBX-like 56 96 - -
Spst2g00887 188 CDD Bbox1_BBX-like 4 47 - -
Spst2g00887 188 MobiDBLite consensus disorder prediction 173 188 - -
Spst2g00887 188 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 168 - -
Spst2g00887 188 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00887 Spst-Chr2 7571024 7572901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00887 1 182 C2C2-CO-like Transcription Factor Family AT4G38960 61.538 1.10e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Spst2g00887 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00887 - - gmx:100780544 354.369