Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00885 ATGGGAAAGCTAGTGGCAAAGCGGAACAAATTTGATTTGATTTTGGTCGCTATGGAGCAGCCTCTTCAACCGCAGTCGGAGGCTGCGGAGAGTGCAGCTGAGGGTTTGGAGGACAAGGGACTGGTAGGAGTCCCTGTCGTGCTGGCTTGTGATGCTGACGTGGCAAAAAGAGATGTTAATAGTTGCTTGCCAAATTTAGAGGTCACAGTAGTTGATGGCGCTGTTTTGAAACGGAAGCGTGGTCGTCCGGCCAAGGGAACACCAAAAGCAGTGCCTCTGGTGAAACAGAAGAAGGACGAGGAGGACGTCTGTTTCATTTGCTTCGATGGCGGGAGCCTAGTTCTCTGCGATCGTAGGGGTTGTCCTAAAGCATATCATCCCACTTGTATCAAGCGAGATGAAGCCTTTTTTCGATCAAAGGCCAAATGGAATTGCGGTTGGCATCTATGCAGCGCTTGTCAAAAGGCGTCGCATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGATGCACAAAAGATGCTGATTTTGTTTGCGTCAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGCTGATTGAGAACAGTGCCCAAGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAAAGTAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGCAAGTTATCTTTAACATTTGGTGAGCTCCTACGAGCTAAAAACCCATGGAAAGGTGTTGCTCCAATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCGGACAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAACCCAAGAGACAGCCAAAACTTCTTAGTAATGCTGATTGCCTGGACAGGATAGCTTCAGGTGGTGACAGAGGTGTGACTTTTCCTGAATGCACAAAATGGGCATCGAAGGAGCTACTAGAGTTTGTTGCACACATGAAAAATGGTGATACTACTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAATATGTAAAGAAAAATAACCTTCGTGATCCTCAACAGATGTCCCAAATTGTTTGTGATTCTAGACTACTAAATTTGTTTGGAAAAGCACGAGTTGGCCACTTTGAAATGCTAAAGCTCCTTGAATCCCATTTTCTTTTAAAAGACAATGGCCCTGCTGAAAATACGTTTGGATCAGGAATTATTAATACTGTTGCTAGTCAAGGGGAGGCCATTGGCAATTACAATAAACAGTTGATGTTAGTTAATGACAAGAGATGTAATTCACATCAAAACGCTGATGTTCTAGTTCCGCAGATTAATCCAGATGCATATGCTGCAATAGATGTTCACAACCTTAACCTGATCTACTTGAGGCGATGTCTCTTGGAGAATCTAACTGAAGATATCGAAAAAATTCACGAGAAGGTTGTTGGTTCATTTGTGCGGATTAGAATCTCTAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCATACAAAATTGGCACAAGAGCAACTGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAAGAGGTCATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGCCAGAGTATAAAATATGGTCTCTCAAAGAGATTGACTGTGGGGGAGATTCTTGACAAAGCATTAACACTTCAAGCAATTAGAGTTAATGATTTTCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAATATCCTTTACCATTTACTACTTTACTCTTTGGTCTACTTAACTCTCCAGAGGAACGTCAACGCAGGCTACATGAAATACCAGATGTACACTCTGACCCCAATTTGGATTTTATGTTTGAGTCTGATGAAGATGATGGAGAGTCTGATGAAAGGAAGCAAGATAGCAATTTATTTTCAAAATATCTTGGGTTTGATAGAAGAGAGAGGGGCTCTTTTTTCCCAAGAATTTCGAGTGGTGTTTTCAACGATGCTGGAGGCAAAACACAAGACTTGCCTGTTACCCGAGAACTAGTTGGGAATATATGCACAGTGAAGGACTGTGATGATACAGCTATCGAGGGTAGCACTAATGCAGTTGTGAAATCAGAAGTGTCCAGTGTTGCAGTGGACATTTCATCATCACCTATTCCTGCTGGGATGCAGCAGCCACTTAGTGATTTTTTGAATGATAGATCATGGAATTATCAAGATCCAACTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCACCTGTACAAGTGGAATGCAAGTGGAAGTTTCCCTCCAGATCTCAAAATATGGAGACTAGGTGAGAGACAGGATAACTCTATATTGTTAACCGACGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCCATTGCTCTCTCTAGGGGTCAGTGTTACATCGGATAATAAAGATAATAGTCAGGATGCTGGGAAAAATTCAGTGAAGAATGGAATTTCTGTAGATGGGCAAATTATTGAACAGAGCAAAGAACAAAAGGTGGACAATACCTCTACCCAGTCTGATGGTAAAGATGAGCTTGTTAGGAGCAATGGATGGCTTGGGCCACAACATGTATACCTTTCACCATTGTCAACTGCCATTCCTGAGAAATTGAATGAGAATTTTTCTGATAAATTAAGGAAAGGTCATGGGAGTGTGCGAAACTCTGAAGATAATGGAAATAATGGCTCAAACAGGACACTGGACGGGCAATGTAATAGTGGGCAAAGTTATCAGAAGCCATCAGATAGTGAAGAGAATTCAGGGCAATCTTCTGGACAGACCTGGAGACATTCTAATGTGAATATCTCTTCCGATTGCTTGGTTACCACATCAGCTCATGTTTCTGGTACAAAAACATCACCGCATAAGCTGGGATTTGATTTACACTGTCCTCCTTCCCCTCCAGCATGTAACACATCATCTGGACAGACCTGGAGTCACCCTAATATACATAGTTCTTCTGATTGCTTGGTTAACACACCAGCTCATGTTTCTGGTACAAAAACATCACCGCATAAGCTAGGCTTCGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACCTGGAGACACTTTGATATCAATAGTTCTTCTAATTGCTTAGTTACCTCATCAACTCACGTTTCTGGTACAAAATCATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCGACATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGACTTTGATGAATCAGTTTCAGATCTGTTGGCGGAAGTGGAAGCAATGGAATCACTAGGTGGTGGCCTGGAATCTCCCACTTCAATCATGAAATGTGGTGACGATTTGGCTGAAGGTTCTAAAAATGATTGTCTCAGCTTTGTTGCAGAGCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGAGATTTAAACTTACCATCTCAACCAACGGCAACAGAGGAACCATTACGGCAAGCAGATGTACATCATCATCAAAGAATTTCTGCGGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGCTAGTGCTTTAGGTAATCAATGGGATTCAGGCTCAGAAAATTCAGCCCTTGTTCCATCTCCTGCAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGCTAGAGAATACACACTTGGGATGGGGTGGAATAGATCAAGGAAATGCAAATTTGGGTTGGGGAGTAGGACAAACAACAGTGCAGGAAAACAGGAGCTCAAATTCATACACTTCTGTAGTAACTCCAGGTTTTGGGGATAGCCAAACAAGGTACGGTGGCGATCGATTTTCTGTACCCAGAGATCGGGGTTCTCAAGGTCATGGTAGGGAATCGGGTTTTGGTAGAAGCAGAATTGCATATACCAGGCAACCTTCATATGGTGGTGGAAATGGAGCCTCATATCGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 4203 0.4249 MGKLVAKRNKFDLILVAMEQPLQPQSEAAESAAEGLEDKGLVGVPVVLACDADVAKRDVNSCLPNLEVTVVDGAVLKRKRGRPAKGTPKAVPLVKQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCIKRDEAFFRSKAKWNCGWHLCSACQKASHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGICMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFGELLRAKNPWKGVAPMSYKVQSPHELYHLRDDKGSGSDNSCIDIESNNLKNKKPKRQPKLLSNADCLDRIASGGDRGVTFPECTKWASKELLEFVAHMKNGDTTLLSQFDVQTLLLEYVKKNNLRDPQQMSQIVCDSRLLNLFGKARVGHFEMLKLLESHFLLKDNGPAENTFGSGIINTVASQGEAIGNYNKQLMLVNDKRCNSHQNADVLVPQINPDAYAAIDVHNLNLIYLRRCLLENLTEDIEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGTSKVAEPYKIGTRATDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILDKALTLQAIRVNDFLEAEILRLNHLRDRASEKGHRKEYPLPFTTLLFGLLNSPEERQRRLHEIPDVHSDPNLDFMFESDEDDGESDERKQDSNLFSKYLGFDRRERGSFFPRISSGVFNDAGGKTQDLPVTRELVGNICTVKDCDDTAIEGSTNAVVKSEVSSVAVDISSSPIPAGMQQPLSDFLNDRSWNYQDPTGKVQGPFSMLHLYKWNASGSFPPDLKIWRLGERQDNSILLTDALSGKCSKNVSLPFNSPLLSLGVSVTSDNKDNSQDAGKNSVKNGISVDGQIIEQSKEQKVDNTSTQSDGKDELVRSNGWLGPQHVYLSPLSTAIPEKLNENFSDKLRKGHGSVRNSEDNGNNGSNRTLDGQCNSGQSYQKPSDSEENSGQSSGQTWRHSNVNISSDCLVTTSAHVSGTKTSPHKLGFDLHCPPSPPACNTSSGQTWSHPNIHSSSDCLVNTPAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWRHFDINSSSNCLVTSSTHVSGTKSSPHKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGGLESPTSIMKCGDDLAEGSKNDCLSFVAELGPMLDAGKGDALSSTGDLNLPSQPTATEEPLRQADVHHHQRISAEHSSRSSKVEVGTKNASALGNQWDSGSENSALVPSPATLGLAIDTTWRLGLENTHLGWGGIDQGNANLGWGVGQTTVQENRSSNSYTSVVTPGFGDSQTRYGGDRFSVPRDRGSQGHGRESGFGRSRIAYTRQPSYGGGNGASYRPLPKGQRVCKFYESGYCKKGASCDYWHP 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00885 1400 SUPERFAMILY CCCH zinc finger 1375 1399 IPR036855 GO:0046872
Spst2g00885 1400 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 67 1400 - -
Spst2g00885 1400 Pfam Plus-3 domain 466 569 IPR004343 GO:0003677
Spst2g00885 1400 MobiDBLite consensus disorder prediction 936 979 - -
Spst2g00885 1400 CDD SWIB-MDM2_like 324 399 - -
Spst2g00885 1400 FunFam Zinc finger CCCH domain-containing protein 19 93 193 - -
Spst2g00885 1400 Gene3D SWIB/MDM2 domain 317 406 IPR036885 -
Spst2g00885 1400 Gene3D - 462 591 IPR036128 GO:0003677
Spst2g00885 1400 ProSiteProfiles GYF domain profile. 770 824 IPR003169 GO:0005515
Spst2g00885 1400 ProSiteProfiles Plus3 domain profile. 461 594 IPR004343 GO:0003677
Spst2g00885 1400 MobiDBLite consensus disorder prediction 1214 1235 - -
Spst2g00885 1400 ProSiteProfiles SWIB/MDM2 domain profile. 318 401 IPR003121 -
Spst2g00885 1400 Coils Coil 595 615 - -
Spst2g00885 1400 SMART PHD_3 103 149 IPR001965 -
Spst2g00885 1400 CDD PHD5_NSD 103 148 - -
Spst2g00885 1400 Gene3D - 772 828 IPR035445 -
Spst2g00885 1400 MobiDBLite consensus disorder prediction 872 897 - -
Spst2g00885 1400 Pfam SWIB/MDM2 domain 326 399 IPR003121 -
Spst2g00885 1400 MobiDBLite consensus disorder prediction 927 979 - -
Spst2g00885 1400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 192 IPR013083 -
Spst2g00885 1400 ProSitePatterns Zinc finger PHD-type signature. 104 164 IPR019786 -
Spst2g00885 1400 ProSiteProfiles Zinc finger PHD-type profile. 101 167 IPR019787 -
Spst2g00885 1400 FunFam Zinc finger CCCH domain-containing protein 19 462 591 - -
Spst2g00885 1400 SMART swib_2 321 404 IPR019835 -
Spst2g00885 1400 MobiDBLite consensus disorder prediction 1306 1371 - -
Spst2g00885 1400 CDD GYF 770 825 IPR003169 GO:0005515
Spst2g00885 1400 Pfam GYF domain 773 813 IPR003169 GO:0005515
Spst2g00885 1400 SUPERFAMILY SWIB/MDM2 domain 323 400 IPR036885 -
Spst2g00885 1400 MobiDBLite consensus disorder prediction 1306 1322 - -
Spst2g00885 1400 MobiDBLite consensus disorder prediction 1191 1238 - -
Spst2g00885 1400 SUPERFAMILY FYVE/PHD zinc finger 96 148 IPR011011 -
Spst2g00885 1400 ProSiteProfiles Zinc finger C3H1-type profile. 1375 1400 IPR000571 GO:0046872
Spst2g00885 1400 SMART rtf1 461 571 IPR004343 GO:0003677
Spst2g00885 1400 SUPERFAMILY GYF domain 764 823 IPR035445 -
Spst2g00885 1400 SUPERFAMILY Plus3-like 462 590 IPR036128 GO:0003677
Spst2g00885 1400 SMART gyf_5 771 826 IPR003169 GO:0005515
Spst2g00885 1400 MobiDBLite consensus disorder prediction 1198 1212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00885 Spst-Chr2 7538624 7545494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00885 101 184 PHD Transcription Factor Family AT5G36670 32.558 2.23e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Spst2g00885 Plus-3 3.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00885 - - vun:114173625 2389.76