Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00877 ATGGGTCGTGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTTACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTCATCATGTTCTCAAAAAACAACAAGATGCATGAATATATTAGTCCTGGCCTTACCACTAAAAAGATCGTTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAAAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCATAGGATTGGTGAGGGTGTGGATTTGGACGAGCTGAGCTTCCAGCAACTGCGCACTCTTGAAGAGGATATGGTTGCTTCCATAGGGAAAATACGCGAGCGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTGCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAACGGTGCCTCCACCCTCTATGCATTCTGCCAAACGAAACCGAAGAAGCACTTTGCAACCACCGCCATCGCATAA 663 0.4434 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIVDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGVDLDELSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELKEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQTKPKKHFATTAIA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00877 220 Coils Coil 85 105 - -
Spst2g00877 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Spst2g00877 220 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst2g00877 220 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Spst2g00877 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst2g00877 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst2g00877 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst2g00877 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst2g00877 220 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst2g00877 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Spst2g00877 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst2g00877 220 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Spst2g00877 220 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Spst2g00877 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00877 Spst-Chr2 7412849 7418177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00877 1 214 MADS-box Gene Family AT3G54340 50.000 7.32e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst2g00877 K-box 5.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00877 K09264 - gmx:100784496 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00877 2 7412849 7418177 Spst2g00877 2 7412849 7418177 ECH