LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g00839	ATGGATCAGTCAACACCTTACTATAACCCATTTCCTCAGACTTCAAACTCAACTAGGAAGGGACGGAGTGGTTATGAGCCATCGGACACAGAGACTGAATGGCAGGAGATTCCACGCCACGAACGAGAAAGAAGAAACTTAACGTTAGAAGAAACTAAAGCACGCACTCTAATGAACAAAAGCCCCATGGCACTACACAGGAGGCACCCTTCGAGGATTGAACATGAAACATCATCGGCTTCAACAAATCCAGTTCCACGGAGAAGACACAATAGCAAATCACCCTATAAGCTGCGCGTACCAGAAGATGTTGCTGCTTCATCATCCCCCATAACTGGTTTGAATAATCGCAGAAATGTCAGTCCTTTGCCGAGACCTGAACTTGGAAGAAACGTGTCTCCTTTCAGAGAGCAAAGAACTGAGAAGCCGCACTACAAGAGATCAGTGACTGCTCCGAGATTGAGGATTCAAGAGAGCAACCCTGGAGGCAGAATCAATGACATGGTTCTGAAACAAAGAGAAGTTTCTCCTTTCAAAGCGCCTTTGGTTGGAGAAATCAACGACATGATAGCACAGGTGAAGCTATCTAAAGACTCCACTAGTGATTATTCGTCAGTGCTTGAAAGCACTGATTCCATTAAACCGGGTGACCTTTTCTTTTCTCGTGAATGCAATGCCTTCCAAGGGGGGAATTCTTCGTTGCCAAAACGCATCCAACAGTGTGAGTATTTCAGTCCAAGGCCTACGGTGAACTCCACGAGAACCCCATCTGAGGGTAAAGGAAATAATGGTGATCTTAACATGAATATGAATATCTTGTCCCGATCAACCACGGGTTTGAGCTCTGCTGCTACGAGTAGAAAGGGCAGTGGCACTGGGAAGCCAAGTAGTGTAACAAGCGAAGGTAGTGGAAAAACAACTGCAAGCATGAGGAAATTCACAGCCAACAGAAAAAAGAACCAGAAAGATACATGGTTTTCTTGCATGAGAACAGGCAACTGTAGAACCTCTAGAAAATCGCCTGAACGTCGACCCATTGACGAAACTTCTTTCATTGAGAGAGCAGTGGTAGTGGAAAGCCTTCCACAGTTCTTGGCAGATAAACACCAACCTGCTTCATTTAATGGCTTCATTTGCAACAGACAAGAAGCTCAGCTTCTCAAGGATTTGGTGTCTCATGGGTCTTGTCCTCATATTTTGCTGAAAGGACCCCCTGGTTCCGGGAAAAGAGAACTAGCAATGGCTCTTCTTCGAGAAATATATGGTGATGCATGTTGTAATCTGTCTCATGATTTAAGACACTTCCCTATTCAGGACCAAAGGCTTAAGAAAGTATTTGTCCCAATAACATCCAGTCCTCATCACATGGAACTAGATGTAAATTCAGAACCAAATGCTAAATATGCTTTAATGGGATTAATCAAAGAAATTAGCAATATATATGCGATTGCCCCTGAAGTCAGCAATATTAATTTCAAGTCAGATTTTAAAGTAATAGTTCTTTACGAGGTCGACAAAGCAGTAGATAATATCCAGCACATTGTCAAATGGATCATAGACCGCTATTCTGATATATGCAAATTAGTAATCTGCTGTGAAGATGATGCAGACATTATTGAACCTGTCAAAAACCGGTTCAAAATTATCCCAGTTGATCTTCCTCAAATTCATGAAATTGTTGAGGTTCTTACGCAGATAGCAAAGATTGAGAACATAGATTTGTCCATGAACTTTGCTGCAAAAATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGCAATCATGGCTCTTGAAGCGTGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCGATTTCAGTGCCGAAATTGATTCTCCAGAAACTCGTAGAACACCTCCTTAAAAGAATTGACGCCAGCTTAAAAAGGGAGCTATACTACTGGCATGCTTATTATGAGAGAAGACTCCCACCAGGAATAACAGCTTTAATAAAGTTAGAAGAATTTGTGGCCAAGTTCATGAGCACATACAGAAAAAGCTCTGGCAGTAGGCAATATGTGTAG	2046	0.4208	MDQSTPYYNPFPQTSNSTRKGRSGYEPSDTETEWQEIPRHERERRNLTLEETKARTLMNKSPMALHRRHPSRIEHETSSASTNPVPRRRHNSKSPYKLRVPEDVAASSSPITGLNNRRNVSPLPRPELGRNVSPFREQRTEKPHYKRSVTAPRLRIQESNPGGRINDMVLKQREVSPFKAPLVGEINDMIAQVKLSKDSTSDYSSVLESTDSIKPGDLFFSRECNAFQGGNSSLPKRIQQCEYFSPRPTVNSTRTPSEGKGNNGDLNMNMNILSRSTTGLSSAATSRKGSGTGKPSSVTSEGSGKTTASMRKFTANRKKNQKDTWFSCMRTGNCRTSRKSPERRPIDETSFIERAVVVESLPQFLADKHQPASFNGFICNRQEAQLLKDLVSHGSCPHILLKGPPGSGKRELAMALLREIYGDACCNLSHDLRHFPIQDQRLKKVFVPITSSPHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYEVDKAVDNIQHIVKWIIDRYSDICKLVICCEDDADIIEPVKNRFKIIPVDLPQIHEIVEVLTQIAKIENIDLSMNFAAKIATKSKQNLRKAIMALEACKAHNYPFSEEQPISVPKLILQKLVEHLLKRIDASLKRELYYWHAYYERRLPPGITALIKLEEFVAKFMSTYRKSSGSRQYV	681

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g00839	681	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	366	614	-	-
	Spst2g00839	681	SUPERFAMILY	post-AAA+ oligomerization domain-like	616	671	IPR008921	GO:0003677\|GO:0006260
	Spst2g00839	681	MobiDBLite	consensus disorder prediction	132	146	-	-
	Spst2g00839	681	FunFam	replication factor C subunit 3	555	613	-	-
	Spst2g00839	681	Gene3D	-	613	671	-	-
	Spst2g00839	681	MobiDBLite	consensus disorder prediction	246	310	-	-
	Spst2g00839	681	MobiDBLite	consensus disorder prediction	24	51	-	-
	Spst2g00839	681	Gene3D	-	556	612	-	-
	Spst2g00839	681	MobiDBLite	consensus disorder prediction	1	146	-	-
	Spst2g00839	681	MobiDBLite	consensus disorder prediction	1	23	-	-

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g00839	Spst-Chr2	7086001	7089865	Dispersed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g00839	364	672	Core DNA Replication Machinery Family	AT5G27740	34.571	7.57e-59	200

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g00839	K10756		-	gmx:100795321	1157.13

Showing 1 to 1 of 1 entries