Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00830 ATGGGTGGGATTTTGCAAAACTTTGCAAAGATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTTAAGAAACAGGCACAGAAGGACCGTGAAGGCGATCTTGACATTGAGGCAGGGAAACTCAACCCCACGGAAGACCGCAACCTCTCTCAATTTTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGATATTACCAACCTCTTAGTTGATCTTCAGCAACTGAATGAAGAGGCAAAGTGCACCCACAGTGCCAAAGTTCTTCGAGGCCTAAGGGACCGCATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGTATTATCAAGGCAATGCTTGAGGTTCTTGACAAATCCAACATAGCCAATCGTCGTTTATCAGAATCCTACAAAGAGGGAAGTCCCATTGACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTATGGCCATGATGAATGATTTTCAGTCCTTGAGAGACAAGATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGATACTACAGAGCAACGGGTGAGGTTCCCACTGAGGAGGTAATGGAGAAGATGGTTTCCGGAAGTCTTAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCAGATTTGGGCACGCAAGTTAGGCACGAGGCAGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTGTTCTGGTTGAGACACAGGGAGAAAACATGGATAACATTGAAGATAATGTGGCTAATGCGGCTAACTTCATCCATGGTGGAACTAATAGTCTCTACTATGCCAGCCAGATGAAGAAGAAGAACAGAAAGTGGTTGTGTTGGGTTTTTGCTGTGGGGCTGATTATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 927 0.4412 MGGILQNFAKMNDLMTKSFLSYVELKKQAQKDREGDLDIEAGKLNPTEDRNLSQFFQEVEAIKVEMEDITNLLVDLQQLNEEAKCTHSAKVLRGLRDRMESDMVAVLRKARIIKAMLEVLDKSNIANRRLSESYKEGSPIDRTRMSVTNGLRVKLMAMMNDFQSLRDKILSDHKEDLKRRYYRATGEVPTEEVMEKMVSGSLKVEFLAGKTDADLGTQVRHEAVMDIQRSLNKLHQVFLDMAVLVETQGENMDNIEDNVANAANFIHGGTNSLYYASQMKKKNRKWLCWVFAVGLIILLVCIVAMLSS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00830 308 PANTHER SYNTAXIN 49 297 IPR045242 -
Spst2g00830 308 CDD SynN 52 202 IPR006011 GO:0016020
Spst2g00830 308 Pfam SNARE domain 250 300 IPR000727 -
Spst2g00830 308 Coils Coil 59 86 - -
Spst2g00830 308 SMART SynN_4 47 174 IPR006011 GO:0016020
Spst2g00830 308 FunFam Syntaxin 132 209 307 - -
Spst2g00830 308 Pfam Syntaxin 54 249 IPR006011 GO:0016020
Spst2g00830 308 Gene3D - 47 178 - -
Spst2g00830 308 Gene3D - 211 307 - -
Spst2g00830 308 SUPERFAMILY t-snare proteins 50 269 IPR010989 GO:0016020|GO:0016192
Spst2g00830 308 CDD SNARE_syntaxin1-like 218 273 - -
Spst2g00830 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Spst2g00830 308 SMART tSNARE_6 209 276 IPR000727 -
Spst2g00830 308 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 49 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00830 Spst-Chr2 7006500 7007796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00830 11 308 SNARE and Associated Proteins AT2G18260 59.609 3.40e-131 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00830 K08486 - gmx:112997615 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00830 2 7006500 7007796 Spst2g00830 2 7006500 7007796 ECH