Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00821 ATGATGGGTATTGGATCATTCAATTCAATGGAGTCTGCGGTTGAAACGTCAGCGTTTTGTCTCGGTCAACACCTTTCACAGTCAACCATAGCCACCTTGATCGCTGCTTCGCCTCTTTCATGGCCAACAATAATCAACATGTCTAGGACACTCCTAATGAGAATGGATATTTCCATTGGTGAAGGGGAGGCCTTACTTAATCCCCGCCCATTTAAGGTTCATAGTAAAATCTGCACAGAACTTGCAAAATTTGTAGATAGAATCTCAAGAAAAGTTCCAGACATAGAGGCGGCACGGCCAGGATTCTCATCAGGAATCGAGTCTCTGTGTTTGCTGAACAATGCAATTGAAAAAGCCAAACTACTTTTGCAGCATTGCTCTGAATGTAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGACTATTAGAGAAAAGCTTAATCCAAATTCAGAATATGGTTCCAGTTATTTTGGCTGTAGAGGTTTCTAGAATAATACATGATCTTGAGTGTACGAGATTTGTTCTGGACCCTGATGAAGAAGAGGCTGGGAGGGTTGTGAGAGAGTTGCTTACTTCAACCTCAGATTCAAACGATGATTCTGAAGTTAAAGCTCTCCAGTCTGCAGCATCTCGACTGAAAATAACATCCCCAAAGGCCATCGTAACAGAGCAACGATCTATTAAGAAGCTGCTTGATAAACTTGGACCAAATGACCTGACAAAGAAGAAGATACTGAGATATCTTCTGCATCTACTGAAAAAACATGCAAAGCTCATGGTGGAAGAACATGTGGAGAGGGTTCCCGAAGAACAAGTTGCAACAGAGAACTCTAGTCAAGATTCTCTACGAAACGATCATGTTGTGTCAGACCAAAGCTTAAACTGTGATGAGTATAGAACTCACATAAGTGAGCTGAGTGGAGTTGCCCCCCCTGAGCAATATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGATTCAGGAGTAACATATGAAAGGATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGCCCCCAAACCAGAAAGAAACTAGTACATATGGAATTAACTCCAAACATGGCCATGAAGGAGTTAATATCAAAGTGGTGCAGAAAAATTGGAGTCTCTATTCCAGATCCTAGTAGCCGTGCAGAAGATATTCGCTCATGGGACGCTTCAAGCACTTCCATTAACAGTTTAGGAAGTTATTTCAATGATTTCAACTATCCAGTGGATCTTAGTAACATGTCAATTGGGTCACTTGATACTAGTTTTAGTTCAGATGCCTCGCATGGTAAGACCACCCGTGCTTCTATGTTGATCAAGACCAGTAACAATTCTGAAAAACATCAACTTCGTACAGAGATGCACGATACTGATTTGATGCTCTTGCCTCAACTCCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAGGATCTGAAAGATCATTTGAAAAGTAATAGCCAAGCTTTTGTGTCGGTATCAGCAGAGAATTTCGTTGAGCCACTCCTCAGATTTCTGAGCAATGCATATGATCTGCGTGATGTTAAAGTGCTGAGAGCTGGAACTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGGCATGATTTCTTTTACCCTTTCTGA 1683 0.4153 MMGIGSFNSMESAVETSAFCLGQHLSQSTIATLIAASPLSWPTIINMSRTLLMRMDISIGEGEALLNPRPFKVHSKICTELAKFVDRISRKVPDIEAARPGFSSGIESLCLLNNAIEKAKLLLQHCSECSKLYLAVTGDTVLSRCLKATRLLEKSLIQIQNMVPVILAVEVSRIIHDLECTRFVLDPDEEEAGRVVRELLTSTSDSNDDSEVKALQSAASRLKITSPKAIVTEQRSIKKLLDKLGPNDLTKKKILRYLLHLLKKHAKLMVEEHVERVPEEQVATENSSQDSLRNDHVVSDQSLNCDEYRTHISELSGVAPPEQYKCPISSRLMYDPVIIDSGVTYERMWIKKWFDEGNDICPQTRKKLVHMELTPNMAMKELISKWCRKIGVSIPDPSSRAEDIRSWDASSTSINSLGSYFNDFNYPVDLSNMSIGSLDTSFSSDASHGKTTRASMLIKTSNNSEKHQLRTEMHDTDLMLLPQLHDLQWDSQCKVIQDLKDHLKSNSQAFVSVSAENFVEPLLRFLSNAYDLRDVKVLRAGTQLLLEFVNNCRHDFFYPF 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00821 560 Pfam U-box domain 321 388 IPR003613 GO:0004842|GO:0016567
Spst2g00821 560 ProSiteProfiles U-box domain profile. 319 393 IPR003613 GO:0004842|GO:0016567
Spst2g00821 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 392 IPR013083 -
Spst2g00821 560 SMART Ubox_2 323 386 IPR003613 GO:0004842|GO:0016567
Spst2g00821 560 SUPERFAMILY RING/U-box 317 396 - -
Spst2g00821 560 CDD RING-Ubox_PUB 321 373 IPR045210 -
Spst2g00821 560 PANTHER U BOX DOMAIN-CONTAINING 75 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00821 Spst-Chr2 6969124 6973939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00821 68 553 U-box Gene Family AT4G36550 37.903 6.42e-95 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00821 - - gmx:100775550 790.415