Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00816 ATGGAAATGAGAGGCCAAGATAAGGAAATAGAGATACCAACAACTTTAGGTTACAACCTTCCCAACCGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACTGTTGGTGAAAGAAGTAGCACTGATCATGATCATGATCAACTTCATCAACCACCTCACCAAACTCACACATTAATCTTCAACGACCCATCTCACCATAATCTCTATCCGCCACCACCACCTCCTCCTCTTGCACCTCGTCAACCTCATAGACTCACATCAGATCCAGATCTAGGCACCCCAATTGCTCCCACACCGAATCCCCTAAGAACTGCACACCCTCAAAGAACAACAATAGCAGCGGCAACAGCAAACTCAACCTCGACCCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGAGAAGAAGGTACGCCGGAATCACTAAGATGCGCCGCGTGTGAGTGCCACCGCAACTTCCACAGGAAAGAGATTGATGGAGAGTTACAGCCACAACTACCACTACCACTACCACAACCACACCATGCTCCCAATTATCCCGGCTACTACCCCAACAAGCACAATGGACACCTTCACTACCCTACACCCTCTTCTTCCTCCCTCCATCATAGATTGGTTGGCACTAGTGGTACACCAAGTTTGGTCCCCCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCAAGTGAAGATCTCAACATGTTCCAGTCCAACATTGGAGGAGCACAGTTATCAGTGCAGGCACCACTCTCTTCCAAGAAGAGGTTTAGGACTAAGTTCTCTCAAAACCAGAAGGATAGGATGATGGAGTTTGCTGACAAGATCGGTTGGAAGATCCAGAAACATAATGAGCAGGAGGTACAACAGTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTCAAGGTTTGGATGCATAATAACAAGCAAACAAGTAGTAAGAAGCAGCCAATGTAA 1023 0.4839 MEMRGQDKEIEIPTTLGYNLPNRDSSSSSSKLSSPTVGERSSTDHDHDQLHQPPHQTHTLIFNDPSHHNLYPPPPPPPLAPRQPHRLTSDPDLGTPIAPTPNPLRTAHPQRTTIAAATANSTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEIDGELQPQLPLPLPQPHHAPNYPGYYPNKHNGHLHYPTPSSSSLHHRLVGTSGTPSLVPPVMMAFGGPAESSSEDLNMFQSNIGGAQLSVQAPLSSKKRFRTKFSQNQKDRMMEFADKIGWKIQKHNEQEVQQFCSQVGVKRQVFKVWMHNNKQTSSKKQPM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00816 340 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 129 178 IPR006456 -
Spst2g00816 340 NCBIfam homeobox domain, ZF-HD class 275 332 IPR006455 -
Spst2g00816 340 MobiDBLite consensus disorder prediction 1 107 - -
Spst2g00816 340 MobiDBLite consensus disorder prediction 68 84 - -
Spst2g00816 340 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 128 179 IPR006456 -
Spst2g00816 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 112 333 - -
Spst2g00816 340 Pfam ZF-HD protein dimerisation region 127 179 IPR006456 -
Spst2g00816 340 Gene3D - 264 337 - -
Spst2g00816 340 FunFam Zinc-finger homeodomain protein 2 263 336 - -
Spst2g00816 340 MobiDBLite consensus disorder prediction 18 39 - -
Spst2g00816 340 SUPERFAMILY Homeodomain-like 264 336 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00816 Spst-Chr2 6928032 6929054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00816 102 337 ZF-HD Transcription Factor Family AT2G18350 47.917 3.72e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst2g00816 ZF-HD_dimer 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00816 - - vra:106776405 536.569