Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00813 ATGCATCGCTGCTGCAGTGGCTCCCAGGGGCACGTGATGGGACCCTGTACATGTGGTATGTTTCACAGCCAAACCACCTCCTTCTCCATGCTCTTCTCAATGCCCAACCACAAACCACCCTGCCAAGATTCCGACATCTATGATTATTCCTTCACGCCCTCATCCTCTTCCTCTTCCGTTGACTGCACCCTCTCCCTCGGAACCCCATCCACCCGTTTCTCCGAAGACGAGGAAAAACGAACCCGCCATGAACGTCGCTCCGTTTCTAACTTCTGCTGGGACTTACTGCAATCCAAACACAACCCTCAATCCCAAACCAAATCCTCCCGAACCTCCAATAGCACCTCCACCACCGACCCTCTCCTCGCTCGTCGCTGCGCCAATTGTGACACCACCTCAACTCCCCTTTGGAGAAATGGCCCCCGTGGCCCCAAGTCACTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAGAGAAGGGCAAGTGCTGCGGCGGCGGCGCCTCCTCCGGCTTCTGTCGGCGTGATGGAATCGGCACAGGTGTATAACAACTCGTGGTACGCACACCCACAGAGTCAGAAGATGCAGTGTTTCTCGCCGGGGATGGGGAACGAGTTCCGTTTCGTGGATGATGGCGATCGAGACACCGATAACGGCATTCCGTTCCTCTCGTGGAGACTCAACGTCACAGACAGAACCAGCCTCGTTCACGACTTCACAAGATGA 729 0.5556 MHRCCSGSQGHVMGPCTCGMFHSQTTSFSMLFSMPNHKPPCQDSDIYDYSFTPSSSSSSVDCTLSLGTPSTRFSEDEEKRTRHERRSVSNFCWDLLQSKHNPQSQTKSSRTSNSTSTTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAAPPPASVGVMESAQVYNNSWYAHPQSQKMQCFSPGMGNEFRFVDDGDRDTDNGIPFLSWRLNVTDRTSLVHDFTR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00813 242 PANTHER GATA TRANSCRIPTION FACTOR 18 11 242 IPR044272 GO:0003700|GO:0009908
Spst2g00813 242 MobiDBLite consensus disorder prediction 99 119 - -
Spst2g00813 242 SMART GATA_3 120 175 IPR000679 GO:0006355|GO:0043565
Spst2g00813 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 162 - -
Spst2g00813 242 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
Spst2g00813 242 Gene3D - 122 180 IPR013088 GO:0006355|GO:0008270
Spst2g00813 242 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Spst2g00813 242 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Spst2g00813 242 ProSiteProfiles GATA-type zinc finger domain profile. 120 156 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00813 Spst-Chr2 6885363 6886284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00813 17 242 C2C2-Gata Transcription Factor Family AT3G50870 43.750 6.50e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst2g00813 GATA 5.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00813 - - gmx:100790571 400.208