Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00800 ATGGAGACGAAAGACAAATTGAATAATGAGGATCTTGTAGAGTCTCCAACTTCGGTTCTCGAAGATGAGGATGTTTGTGTCACCAAAGATGAAGTTAAATCGGAGGAAGAATTTATTGCCGATGCTAAATACGATGGTCCGTCTCTTGTGTCGAAAACTATGGCGGAGGAGGAAGAGAAGTTACTTGAAGCTAGGATTAAGGTAGAGGAGGTGCGGTGCGAGGAGGCACTTGACCTCAACGAGACGCAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAACTGTACTCTGAATTTTTGCTGGAGAAAATGGATGACATCGCACTTACTGTGGGTGAACAAGAGAAAGTGGAGGAGCTAGAGGGCAATCCTTCGGCAAAGAAGGGCCGTGGATCCAAAAGAAAAGCTGCTTCCCAATACAATACTAGGAAGGCCAAAAAAGCAGTTGCTGCCATGCTGACAAGATCTAAAGAAGGGGATGGGATTGTAGATATGAAAATGACAGAGGAAGAAAGAGTTAAGAAGGAACAGGACGAGCTCATGCCTTTACTGACAGGTGGACATTTGAAGCCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGTCTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGATTTCTCTCACATCTTAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAATGAGATTTCTAGGTTTGCACCATCGCTTCCTGCCATTATCTACCATGGTGACAAGAAGCAGAGAGATGAGATCCGAAGGAAACATATGCCTACTAAAACAATTGGCCCAAAATTTCCCATAGTCATAACTTCTTACGAGATTGCATTAAATGACGCTAGGAAATGTTTCAGGCCATACAATTGGAAATATATTGTTGTTGATGAGGGACACAGGCTCAAAAACTCAAAATGCAAATTAGTGAAGGAATTGAAATGCATAAATATTGAAAACAAGCTTCTTCTAACTGGAACACCTCTTCAGAATAACCTGGCCGAACTATGGTCTCTATTGAACTTCATTTTGCCTGATATCTTCGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGCGAAGTGCAATAATGGAGCAACCAAGGAAGAACTGGAAGAGAAACGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCTATTCTTCGACCCTTCCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCACAGAAAAAGGAGATTATTATTTATGCAAACATGACTGAGCATCAGAAGAATTTGCAAGATCATTTAGTTAATAAGACGTTGGGAAACTATTTAAAAGAAAAGATGTCCAGTGGACGCTCTATTCCTGCAAATTTGATTCGTAATTTGGTTATTCAGCTTAGGAAGGTGTGTAACCATCCTGATCTTCTAGATTCAGCCTGTGATGATACATCTCTGTATCCTCCATTAAATGAGATGGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGCTGGAACGTTTATTTGCGAGGAATCACAAAGTTCTTGTCTTCAGTCAGTTTACTAAAGTGTTAGACATAATGGATTATTATTTTTCTGAAAAAGGCTTTGAAGTTTGCCGGATTGATGGTTCTGTGAGACTGGATGAGAGGAAACGTCAGATCCACGAATTCAATGATGCCAATAGCAATTGCAGAGTCTTTCTTCTTTCTACTCGGGCTGGGGGATTGGGAATCAACCTCACCGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGGTGTCATAGAATCGGTCAAACAAAACCTGTTCATGTCTACAGGCTCTCAACTGCTCAATCCATAGAGGATCACATGTTGAAAAGAGCTTTCAGCAAATTGAAACTTGAGCATTTAGTGATTGGTAAAGGACAGTTTCATCAAGAACGCACAAAAACTGTCAGTACGGATGAATTGGTGGAGGAAGATGTTTTGGCATTGCTTCGTGACGAAGAAACAGCCGAAGATAAAATGATACGTACAGGAATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTATTGTCAACAACGCAGATGGAAACTTGAAAGCTCCATGTAGTACGTTTCCTCTTCAAGGACCAGGGTGGGAAGTGGTGATTCCAAACACGAGTGGCGGCATGCTCTCTACTCTGAACAGCTAG 2283 0.4161 METKDKLNNEDLVESPTSVLEDEDVCVTKDEVKSEEEFIADAKYDGPSLVSKTMAEEEEKLLEARIKVEEVRCEEALDLNETQFNKLDELLTQTKLYSEFLLEKMDDIALTVGEQEKVEELEGNPSAKKGRGSKRKAASQYNTRKAKKAVAAMLTRSKEGDGIVDMKMTEEERVKKEQDELMPLLTGGHLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAIIYHGDKKQRDEIRRKHMPTKTIGPKFPIVITSYEIALNDARKCFRPYNWKYIVVDEGHRLKNSKCKLVKELKCINIENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKCNNGATKEELEEKRRAQVVAKLHAILRPFLLRRMKSDVEIMLPQKKEIIIYANMTEHQKNLQDHLVNKTLGNYLKEKMSSGRSIPANLIRNLVIQLRKVCNHPDLLDSACDDTSLYPPLNEMVEQCGKFHLLDRLLERLFARNHKVLVFSQFTKVLDIMDYYFSEKGFEVCRIDGSVRLDERKRQIHEFNDANSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEDHMLKRAFSKLKLEHLVIGKGQFHQERTKTVSTDELVEEDVLALLRDEETAEDKMIRTGISDEDLEKLLDRSDLIVNNADGNLKAPCSTFPLQGPGWEVVIPNTSGGMLSTLNS 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00800 760 Pfam SNF2-related domain 193 493 IPR000330 GO:0005524|GO:0140658
Spst2g00800 760 CDD SF2_C_SNF 505 639 - -
Spst2g00800 760 SMART helicmild6 545 629 IPR001650 -
Spst2g00800 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 519 678 IPR001650 -
Spst2g00800 760 MobiDBLite consensus disorder prediction 117 143 - -
Spst2g00800 760 FunFam ATP-dependent DNA helicase DDM1 184 430 - -
Spst2g00800 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 686 IPR027417 -
Spst2g00800 760 Gene3D - 427 730 IPR027417 -
Spst2g00800 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 371 IPR014001 -
Spst2g00800 760 FunFam Chromatin complex subunit A 106 431 660 - -
Spst2g00800 760 SMART ultradead3 186 382 IPR014001 -
Spst2g00800 760 Pfam Helicase conserved C-terminal domain 519 629 IPR001650 -
Spst2g00800 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 421 IPR027417 -
Spst2g00800 760 PANTHER SNF2/RAD54 HELICASE FAMILY 50 717 - -
Spst2g00800 760 Coils Coil 54 74 - -
Spst2g00800 760 Gene3D - 159 420 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00800 Spst-Chr2 6746656 6752520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00800 206 650 RAD5 or RAD16-like Gene Family AT3G16600 24.412 1.79e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst2g00800 SNF2_N 2.1e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00800 K19001 - gmx:100777687 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00800 2 6746656 6752520 Spst2g00800 2 6746656 6752520 ECH