Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00798 ATGGGGGACTTCAACAACAATAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGCTCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGGCAGAGTCATCCTACTGGTCTCACAGCAAACCTGCTGAAGCTCTTCGAGCCTAGGCCTCCCTTGGAGTACAAACCGCCGCCGGAGAAACGGAAATGTCCACCGTTGACAGGGATGGCACAATTTGTGGGCAAGTTTGCCGAGCCTGGGGATCCAGAATATGCTCCACCTGTTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAAAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAATATGACCCACAGAATGACCCAAATGTATCTGGAGATCCATACAAGACATTGTTTGTAGCTAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGGTTAGTTGTGGACAAAGAGACAAATAAGCCCAAGGGTTATGCTTTTATTGAGTTTCTGCATACAAGAGACATGAAAGCTGCTTATAAACAGGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGGCCTCGCCGCTTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAACTTAATCAGCGACATTCTGGGAGGGAGCAACAGCAGTCTCGTTCTGAAGAACCAAGAGCACGGGAGGATCGACATGGCGATAGAGACAGGGAAATATCGCGTGAAAAAGGTAGGGATAGGGATAGAGAACGGGAGCGATCAAGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGATTATAGAGAGGATAGACACCACAGAGACCGTGAAAGGAACAGGGACAGAGATAGGGAAAGAGAAAGAGATCGTGGACATAGAGCACGGGATCGGGATAGAGAGAGGGACCGTGATCGACATCGTGAAAGGGATAGAGATCATGAAGTTGGGGATACTGATCGACGCTCACGTGACAGGGAGTCTGATTATGATCGTGTTGAATCTAAGCATGAGAGGGATCAACATGGGGAAAGGAATCGCGACTATGAACCTGAGGACGATCGTGGTAGGCATAACCAGTATGAACATGGTCGTCGGCATGCAGACCCTGATCATGACCTAGAACAGTATGACCACTACAATCGTGGAGATGACCGTGGTGATCGAGGCGATCATTACAATCAGTATCATGACCATGATAGGATGGAAGATGACTACCATGTAGGACGGGCAACATCTGAATCACATGAGAAGGAGAGAAGTCATGGTACAGACCGAGAATATCGTCGCGCAGAGAGATCTCATTCCCGGGAGTACGATTACTAG 1434 0.4881 MGDFNNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVGKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVVDKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEELNQRHSGREQQQSRSEEPRAREDRHGDRDREISREKGRDRDRERERSREHSHERVRDRDYREDRHHRDRERNRDRDRERERDRGHRARDRDRERDRDRHRERDRDHEVGDTDRRSRDRESDYDRVESKHERDQHGERNRDYEPEDDRGRHNQYEHGRRHADPDHDLEQYDHYNRGDDRGDRGDHYNQYHDHDRMEDDYHVGRATSESHEKERSHGTDREYRRAERSHSREYDY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00798 477 FunFam U1 small nuclear ribonucleoprotein 70 kDa 129 254 - -
Spst2g00798 477 CDD RRM_snRNP70 141 231 IPR034143 GO:0030619
Spst2g00798 477 MobiDBLite consensus disorder prediction 245 477 - -
Spst2g00798 477 SUPERFAMILY RNA-binding domain, RBD 130 242 IPR035979 GO:0003676
Spst2g00798 477 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 63 326 - -
Spst2g00798 477 SMART rrm1_1 143 216 IPR000504 GO:0003723
Spst2g00798 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Spst2g00798 477 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 45 133 IPR022023 -
Spst2g00798 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 213 IPR000504 GO:0003723
Spst2g00798 477 Gene3D - 129 255 IPR012677 -
Spst2g00798 477 MobiDBLite consensus disorder prediction 224 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00798 Spst-Chr2 6733141 6737327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00798 144 190 C2H2 Transcription Factor Family AT2G19380 42.553 1.69e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00798 K11093 - gmx:100800903 630.557