Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00776 ATGAATGGTGAGGATAGAGGTTGTACCGCGATGATAAAGAAAAAGGTGAAGAAACTAACATATCACACTGGTTTTGAGATCGAAGAGATCGAAACCAGTGGAGAGAGATCGAGCTATAGCTTGATATACCCTGCCGATGCACCATACACTCAAATAATTGCCCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTAGTAAGAAGAACAAAGGAGGTGAAAACGGTGCCTCCGATGCCAACAAGAAGAGGAAGCTTAGTGCGGAGCAAGTTAATCTACTTGAGCAGAACTTCGGAAATGAGCATAAACTTGAGTCTGAGAGAAAAGACAGGCTCGCATTGGAGCTTGGTTTGGACCCTCGACAAGTTGCAGTGTGGTTTCAAAACAGACGAGCTCGCTGGAAGAACAAAAAACTTGAAGAAGAGTACTCAAACCTTAAAAAATCCCATGAAGCCACCATGCTCGAGAAATGTCGCTTGGAGACTGAGGTTCTGAAGCTGAAAGAGCAACTTTCTGAGGCGGAGAAGGAGATTCAGAGGCTGCTAGAAAGTGGTGATAGGGTTCCAAGCAACAGTTCTAGCTCCTCACAGTCGCAATCACAGTCTATGGAGGCGGTGGACCCACCATTCTTTGGGGAGTTTGGAGTTGATGGTTATGATGACAATGTATTCTACGGGCCCGAGACTCACTACATCAACGCCATGGAATGGATTAATCTGTATATGTAA 729 0.4554 MNGEDRGCTAMIKKKVKKLTYHTGFEIEEIETSGERSSYSLIYPADAPYTQIIAQQGESKKPKRRRSKKNKGGENGASDANKKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEATMLEKCRLETEVLKLKEQLSEAEKEIQRLLESGDRVPSNSSSSSQSQSQSMEAVDPPFFGEFGVDGYDDNVFYGPETHYINAMEWINLYM 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00776 242 SMART HOX_1 80 141 IPR001356 GO:0003677
Spst2g00776 242 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Spst2g00776 242 MobiDBLite consensus disorder prediction 51 85 - -
Spst2g00776 242 MobiDBLite consensus disorder prediction 182 204 - -
Spst2g00776 242 FunFam homeobox-leucine zipper protein ATHB-40 76 145 - -
Spst2g00776 242 Coils Coil 129 184 - -
Spst2g00776 242 MobiDBLite consensus disorder prediction 185 204 - -
Spst2g00776 242 SUPERFAMILY Homeodomain-like 81 146 IPR009057 -
Spst2g00776 242 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Spst2g00776 242 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Spst2g00776 242 Pfam Homeodomain 82 136 IPR001356 GO:0003677
Spst2g00776 242 CDD homeodomain 82 138 IPR001356 GO:0003677
Spst2g00776 242 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Spst2g00776 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 200 IPR045224 GO:0003700
Spst2g00776 242 MobiDBLite consensus disorder prediction 71 85 - -
Spst2g00776 242 Gene3D - 73 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00776 Spst-Chr2 6573259 6578432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00776 40 242 Homeobox Transcription Factor Family AT4G36740 60.476 7.15e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Spst2g00776 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00776 K09338 - gmx:100809616 334.724