Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00754 ATGGTTGACAACACTGGAGAAGAAGAAGTTGAGCTGTCAATTCTTCTTCCGCAATCTAACCTACTTCAAAAGCCAGCATGCGGTCACCTCCGAGACACGCACTTAGTTCCAGGAAAGTTGCTTAAGGGTTCTGATCATATTTCACTTGGGCAATACCAAGGCAAATTTGGAGAGGACAGAATTTGGGATGACCATCGTATTTCAATGCAAGAAGCTATCAAGGATGACTTAACGGATATTGAGAAAGAAGACATTGACCGTGCAATTGCACTCTCCCTGTCACAGGAGGATCCGAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAATCTGAAGATGAGCAACTTTGTAAAATTGATGACGAGGAAGATGAATATCTTGCCAAAATTCAACAAGAAGAAGATGAACAACTTGCTAAACTTCAACAAGAAGAAGATGAACAACTTGCTAAACTTCAACAAGAAGAAGATGAACGTCTTGCTAAAATTCAACAAGCTGAAGTTGAACGTCTTGCTAAAGCTCAACTTGAGGAAGATGAGCAACTTGCTAGGGCAATTCAAGAAAGTTTGACCATTGGTTCTTCTCCTGGATCTGACAATGATTCTTCATTTCTATCTTATCCTCACCCCTTTCCTCCTGGATACAGAATCTGTGCTGGGTGCAAGACTGAGATTGGTCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATGCATGCCGTCTGCCAATTACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCCTTCCATAAATCATGCTATAGGGAGAAACATCACCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAGTACTGCCCGTCTCATGAGCTTGATGGCACTCCTCGATGCTGTAGCTGTGAAAGAATGGAGGAGCTTACTGATGGATCCGTTCCTTTCCTTCTTTTGTCTTTTCGATCAGTGCAGCCAAGGGATGCAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCTATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCTATGGAGGGAGAAAAGAATGCAAGTGGTCATCATCACTTACCTGAAACTAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCACCACTATTTCAAGGAGGCCAAGGATCGGTGCTGGCTACCGAGTCATAGACATGATAACTGAACCTTATAAGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTAGTTTTGTATGGCCTTCCCAGGTTGTTAACAGGATCGATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTGATGGCTCATATGTGGTTAGATTCCGAGCTCTATTCCGGATCTGGGAATGATGGTGCATCTTCATCATCATTGTCTTCATCTTCATCGTCTCCTTCTTCCTCTACTGCATCATCGAAGAAGGGGAAACGGTCCAACTTTGAGAAGAAACTCGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCGGCTTATGGAGATGGATTCAGATCGGGTAACCAGGCAATGCTCAAGTATGGGCTCAAAAGGACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA 1824 0.4282 MVDNTGEEEVELSILLPQSNLLQKPACGHLRDTHLVPGKLLKGSDHISLGQYQGKFGEDRIWDDHRISMQEAIKDDLTDIEKEDIDRAIALSLSQEDPKGKKVVEDDSQSEDEQLCKIDDEEDEYLAKIQQEEDEQLAKLQQEEDEQLAKLQQEEDERLAKIQQAEVERLAKAQLEEDEQLARAIQESLTIGSSPGSDNDSSFLSYPHPFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACRLPITDYEFSMSSNRPFHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEELTDGSVPFLLLSFRSVQPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNASGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRVIDMITEPYKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVMAHMWLDSELYSGSGNDGASSSSLSSSSSSPSSSTASSKKGKRSNFEKKLGEFFKHQIESDTSSAYGDGFRSGNQAMLKYGLKRTLDHIHMTGSFPY 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00754 607 MobiDBLite consensus disorder prediction 527 550 - -
Spst2g00754 607 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 300 - -
Spst2g00754 607 PANTHER PROTEIN DA1-RELATED 2 39 607 IPR045218 -
Spst2g00754 607 CDD LIM_DA1 217 269 - -
Spst2g00754 607 Pfam LIM domain 217 272 IPR001781 -
Spst2g00754 607 Pfam Protein DA1 384 602 IPR022087 -
Spst2g00754 607 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 176 189 IPR003903 -
Spst2g00754 607 FunFam Protein DA1-related 1 211 270 - -
Spst2g00754 607 MobiDBLite consensus disorder prediction 527 553 - -
Spst2g00754 607 ProSitePatterns LIM zinc-binding domain signature. 217 251 IPR001781 -
Spst2g00754 607 Gene3D Cysteine Rich Protein 214 276 - -
Spst2g00754 607 ProSiteProfiles LIM domain profile. 215 275 IPR001781 -
Spst2g00754 607 SMART lim_4 216 268 IPR001781 -
Spst2g00754 607 CDD UDM1_RNF168_RNF169-like 124 183 - -
Spst2g00754 607 Coils Coil 126 168 - -
Spst2g00754 607 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 242 - -
Spst2g00754 607 SMART uim 80 99 IPR003903 -
Spst2g00754 607 SMART uim 176 195 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00754 Spst-Chr2 6287028 6303583 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst2g00754 DA1-like 6e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00754 - - vum:124826554 959.518