Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00713 ATGGTAGTTTGCGATTTGTGGGAGCATACTCTCCACTCACAGAAAACATCCAATCCACAACACCACCGTGCTTTCATGGAGCTCAGCTTGGACTTGAGTTTGGGCTTTGTCCCCAAACCCATTTCCCTCTTTTTCGGGGAAGTTTCTGGGAACAGAGACAAGCGTGACAAAGTTGCCACGCTCGACGGCTTCGTGCAGAGATTGGAGGACGAATTGAGGAAAGTTGAGGCCTTCAAACGCGAGCTTCCTCTTTGCATGCTCCTCTTGAACGACGCTATAGCAAGATTGAAGGAGGAAAAAGTAAAGTGTTCAATATTGCAAGATCCACCTGCAAGGGAAGAGTTTGTGCCACTGAAAACCAACTCTGGGGGTAACGGAAATGAAAGATGTGAGAAGAAGAATTGGATGAGTTCAGCTCAGCTTTGGAGCAATCTGAAAATAAAATCGAGGAATGGAGAAGGTGATAGGTCTGTGCCAGAGAACCCAATTAATGGGAGCTCGTCTGCCCAGAGGAAGGAGGGTTTACAAGTTCCTAGCTTTGGTTTGATGGGTCATGCGTCTGAACTGAGTCATAGCAATTCCAAGAGTGTTTGTGGAGATACTAGTTCTGGCTCTTCTTTTCTCCGTGTTGAGGTACAGAGTCAGCCGCAACCACCGCAACATATGCAGCAGAATCCTAGGAAACAAAGGAGGTGCTGGTCGCCGGAGCTTCACCGGCGTTTTGTGGATGCGCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAAGTGGAGACCCTGACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATGTTAAAAGATTTCCAGCTTCATCAGTTGGGCAGGCTGATAATGGCTCATGGATGGGCCAAGATGAGTGTGGGGATAAATCAAAAGGAAACTTGTCATCACAGTCTGGTTCTCCACAAGGTCCTCTCACACCTCTCCTCCTAGGAGGAGGCGGGTCTGCTAAGGGTCTCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCAGATTGCAGGAATTGGAAAGGAGGGCTCCACCAGCACCTTGAAGCTGATAATCAGAGCCTCTAA 1125 0.4809 MVVCDLWEHTLHSQKTSNPQHHRAFMELSLDLSLGFVPKPISLFFGEVSGNRDKRDKVATLDGFVQRLEDELRKVEAFKRELPLCMLLLNDAIARLKEEKVKCSILQDPPAREEFVPLKTNSGGNGNERCEKKNWMSSAQLWSNLKIKSRNGEGDRSVPENPINGSSSAQRKEGLQVPSFGLMGHASELSHSNSKSVCGDTSSGSSFLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVETLTNDEVKSHLQKYRLHVKRFPASSVGQADNGSWMGQDECGDKSKGNLSSQSGSPQGPLTPLLLGGGGSAKGLSSPGRNSVDAEDEQSDCRNWKGGLHQHLEADNQSL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00713 374 NCBIfam myb-like DNA-binding domain, SHAQKYF class 228 283 IPR006447 GO:0003677
Spst2g00713 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 33 359 IPR044787 GO:0003700|GO:0006355
Spst2g00713 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 285 IPR017930 -
Spst2g00713 374 MobiDBLite consensus disorder prediction 309 324 - -
Spst2g00713 374 MobiDBLite consensus disorder prediction 149 172 - -
Spst2g00713 374 SUPERFAMILY Homeodomain-like 226 286 IPR009057 -
Spst2g00713 374 Pfam Myb-like DNA-binding domain 230 281 IPR001005 -
Spst2g00713 374 Coils Coil 61 81 - -
Spst2g00713 374 Gene3D - 227 284 - -
Spst2g00713 374 FunFam Myb family transcription factor 227 285 - -
Spst2g00713 374 MobiDBLite consensus disorder prediction 348 364 - -
Spst2g00713 374 MobiDBLite consensus disorder prediction 291 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00713 Spst-Chr2 5953330 5955287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00713 26 278 G2-like Transcription Factor Family AT4G37180 42.647 2.04e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst2g00713 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00713 - - pvu:PHAVU_002G021400g 645.195