Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00678 ATGAGAGATTGCGAAGCGGCGAGTCATCCCGTTCTCTTTCATTGTGATTTGTTGAAGTCCTTGATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATGTCGATACCGAAGGATTAAGGGAATATATGAGCAAATTTGGGGAGCTAGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGAAGGTCTCGAGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTAGCCACACCGAAGGAGGAAATGAGGGCACCGGTAAAAAAAGTTACTAGAATATTTGTAGCCAGGATCCCACAATCAGTAACAGAAGCTACTTTCCGAAGTCATTTTGAGACATATGGAGATATAACAGATCTGTACATGCCAAAGGATCAAGGCTCCAAAACACATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAAAATTTGATGTCAGAAACCCATGAATTAGGAGGTTCTGCGGTGGTGGTTGATCGAGCTACTCCAAAGGATGAAGACTTTAAGCCAACTGGCAGCAGAATGCCGCCACAAGGAGGATATGGTGCATACAATGCTTACATTTCTGCAGCCACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGACGGGGAGAGCCTGCTCGGAGAACTAGTAAAAAAATTTTTGTTGGCCGTCTTCCCCCAGAAGCAACTTCTGAGGATCTTCGTCAATATTTTGGACGATTTGGCCGTATATTAGATGTTTACGTTCCTAGGGATCCTAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAAATTTGTGGACATCAGGTAGCAATAGATTCGGCTACACCTGTTGATGATGCAGGGCCCAGTGGGAATTTCATGATGAATAGTATGGAATCTTTTGGGGGATACGGCGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTGGACTTTGACGATTGGGGTTATGGTATTGGGAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1143 0.4427 MRDCEAASHPVLFHCDLLKSLMEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFETYGDITDLYMPKDQGSKTHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDEDFKPTGSRMPPQGGYGAYNAYISAATRYAALGTPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMNSMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00678 380 Gene3D - 19 109 IPR012677 -
Spst2g00678 380 Gene3D - 110 196 IPR012677 -
Spst2g00678 380 Gene3D - 242 327 IPR012677 -
Spst2g00678 380 FunFam heterogeneous nuclear ribonucleoprotein 1 23 104 - -
Spst2g00678 380 SUPERFAMILY RNA-binding domain, RBD 23 107 IPR035979 GO:0003676
Spst2g00678 380 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 243 354 - -
Spst2g00678 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 323 IPR000504 GO:0003723
Spst2g00678 380 FunFam heterogeneous nuclear ribonucleoprotein 1 105 197 - -
Spst2g00678 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 101 IPR000504 GO:0003723
Spst2g00678 380 SUPERFAMILY RNA-binding domain, RBD 243 346 IPR035979 GO:0003676
Spst2g00678 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 303 IPR000504 GO:0003723
Spst2g00678 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Spst2g00678 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 94 IPR000504 GO:0003723
Spst2g00678 380 SUPERFAMILY RNA-binding domain, RBD 109 210 IPR035979 GO:0003676
Spst2g00678 380 SMART rrm1_1 114 185 IPR000504 GO:0003723
Spst2g00678 380 SMART rrm1_1 248 319 IPR000504 GO:0003723
Spst2g00678 380 SMART rrm1_1 26 97 IPR000504 GO:0003723
Spst2g00678 380 FunFam RNA-binding family protein isoform 1 244 327 - -
Spst2g00678 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00678 Spst-Chr2 5620586 5624991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00678 38 295 Eukaryotic Initiation Factors Gene Family AT2G36660 24.046 2.60e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00678 K14411 - gmx:100795240 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00678 2 5620586 5624991 Spst2g00678 2 5620586 5624991 ECH