Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00674 ATGGACGTGGACATACTGAAAACCTCCACGAGTGACACCAGCATGGACATGATGATGATGATGCAAATGGAAAAGTTCCCTGAATTATGTGAACCTTTTTATAACAGCACCAATCTTCTCTACCCAGAAAACGAGTTCTTAAGCTCCACCACCAATACGCCACCCGTGTTCTCCAATCTTAACCCAAACGTTATAACTCCAGCACCCACTTTGATCAATCCACCACCACCTTCCTATAATTTTGTTCTCCAACAACCCATGACTCCTCCCCTTGAACCCAACCCTTCGTTTTCGGAGAAGAAGAACTCTGTGGCGGCCATGAGGGAGATGATTTTTCGCGTGGCAGTGATGCAACCTATTCATATAGACCCTGAATCTATCAAGCCTCCTAAGAGAAGGAACGTAAAGATTTCGAAGGATCCACAGAGTGTGGCAGCGAGGCACAGAAGGGAAAGGATAAGCGAGAGAATAAGGATCCTTCAGAGATTAGTTCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAAGCCATACACTACGTGAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGGGCAACTAGACCCTTGAGCGTTGTTGGCTTCCCTGGTACTGTGTCCAACACCAATAACAACATTAATTTTTCTTCTTTTGTGAAGAGTTGCCAACCGTGTCATATGCTTGGTTCTGCAGCTTCTAAACACATGCTCAGTTGA 732 0.4563 MDVDILKTSTSDTSMDMMMMMQMEKFPELCEPFYNSTNLLYPENEFLSSTTNTPPVFSNLNPNVITPAPTLINPPPPSYNFVLQQPMTPPLEPNPSFSEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLSVVGFPGTVSNTNNNINFSSFVKSCQPCHMLGSAASKHMLS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00674 243 CDD bHLH_AtIND_like 138 194 - -
Spst2g00674 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Spst2g00674 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 196 IPR036638 GO:0046983
Spst2g00674 243 Coils Coil 176 196 - -
Spst2g00674 243 Gene3D - 136 201 IPR036638 GO:0046983
Spst2g00674 243 SMART finulus 143 192 IPR011598 GO:0046983
Spst2g00674 243 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 222 IPR045843 GO:0003700|GO:0006355
Spst2g00674 243 FunFam BHLH transcription factor 140 202 - -
Spst2g00674 243 Pfam Helix-loop-helix DNA-binding domain 147 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00674 Spst-Chr2 5580488 5581219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00674 11 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.561 3.95e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g00674 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00674 - - gmx:100796649 350.132