Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00669 ATGGTGGACGAGGAGCCAGTAAGCGGAAGGCGAAGGTCAAGGGGACCGGAGGCCACCGCTCGCAGTGAAGCGTTGGAGCGTCTAAAGGCTCGCCTCCAAGGCGGTCGTCGATCCGACGGCACTGGGCCCCAAATCAGGTTAGAAAACCCTATCTACGACACTGTCCCTGAGGATGAGTACAACGCCCTCGTCGCTAAACGCCGTGAACAGGCGCGCTCCTTCATCGTCGACGATGAAGGAATCGGATACGGCGATGAGGGCGAGGAAGAGGACTGGTCTCAAGCTGGATTCACTCTCTCCTCCGATAAATCCGAAGGCGAATCGGAGAGACCGAAGCGGAAGAAGGTCGAGAAGAAGGATCCCCAGCCAAAACGTCCTTCTTCGTCGCTCTCCGCCGCTGCAGCCATGATGGGAGGGCAGAGGCTGTCTTCCATGTTCACTTCTTCCGTTTTCAAGAAGAGCAGAGACGACAAAGCCTGCGAGAGCATCGTCGACGATGTTATCGCTGAATTCGCTCCGGACGAGACCGATAGACTGAGGCGCAGAAGAGCGCAAGGGAATTCCTCTTCGTCTTCCATTTCCGTTGCAAACAATACTTTGCGTGTTAACAACACATATAAGGATAAGCCTTCTGCTGATATGATGGGAGGTTTTTCTTCATTGTCGGAAAATGGTGACGCGGAGTCTGTTAAGGTAATTGTTGATAGCGATGGTTTTGAGTCGGGGTTTGAGCAAAAGAGCGAGGTGGTTAGTCAAATCGAAGATTTCGGGCGTGGAAGTTCTGAAAATGGACTGGCACCGATGGTGGAAGCTGATGATTGTAAAATTATTGAAGGCATGGTTGAGGAGAAAGAGGTGAAGAGTTTTGAAATTGAAGTCAAAGCAGGTGCGAAAAAGGAGGTGTTCACTTTGAACGCGAAGGTTAAAGAGGAGGAGGATCCTGCATTGTTTGCGACTGCTGGTTGGAAGGAAGCAATGCGCGATGCTGGTGGCGTCGATGTTGCTGTTTCGAAGGATGCTTTGCATAACCAACAACACTCAGAGTTTGACCTGGAGGAAGATGGATCACTGCCTTTCTATATATTAGATGCCTACGAGGAGTTTTATGGGGAAAATAGGGGCACCCTTTATCTGTTTGGGAAGGTTAAAACAGGGGATTTGTATCAGAGTTGCTGTGTTATTGTGAAGAACATGCAAAGGTGCGTCTATGCAGTTCCTAGCCGACCTTTGCATCGGACTGAAGAGATGACTAGTCTTGAAAGAGATGCCCAGGAGTCTCGAATTTCTTCTGCAGATTTATTTAAAAAGTTGCAAGATGCAGTGTCTGATGTGAAGAACGAGATAGCACAGCATTTGGTGAATTTGGATGTTTCTAACTTCAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGATTTGAAATTCCTGCAGGTGAAAATTATGTCGTAAAAATCAATTATTCATTCAAGGATCCTGTACTTCCAGTAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTGGTTGCAGTGCGCTCGAGCTTTTTCTGATTAAACGGAAGATAAAGGGGCCTTCATGGCTACAGGTTTCTAAGTTTTCTATGAGCTCATCTTCCCGAAGGGTTAGCTGGTGCAAATTTGAAGTGACCGTTGACTCACCTAAACACATAAGAACTTCAGCTCCTTCAAAAATCACTTCTAAGATTCCTCCGGTGGTTGTTGCAGCGATAAACTTAAAAACCATCATAAATGAAAAACAGAACATAAATGAGATTGTATCAGCATCAGTTGTCTGTTGCAACATGGTTAAGGTTGTTTTTGGGTCCTTTTTTAGTGTTTGCTTACCATCACTTTGGGTTTCTTATGCATTGAATGTTCAAATAACTGTCCCCGAGTATCTGGTCCTATCAATTGATACCCCTATGATGGCTTCAGAGTGGAGGAGACCGGGAAGATTGACCCATTTTACTGTTGTTCGTAAACTAGACGGGAGTATATTCCCTATGGGATTCAACAAGGAGGTTACAGACAGAAACATAAAATCTGGTTCAAATATTCTCTGTGCTGAAAGCAGTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACTTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTAGCAAGCAGCATGTGGTCTAAGCTAGGTCGACTCAACCGATCGACAATGCCTAAACTTGGACGAAGAAGCAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCTTGCATTGCTGGCCGGCTTCTTTGTGATACATACACATGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCAAAATCACACCTGAACAAGTTTAGAAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAATCAGCAGAATCCCTAATGGAGCTTATTGAATATGGTGAAACAGACGCATGGTTGTCTATGGAACTCATGTTTTATTTAAGTATTCTTCCGCTGACACGTCAGCTTACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGAGTTGAGTATCTTTTGCTGCATACATTCCATGCAATGAAATATATGGTGCCAGACAAGTTCTCAAACTATGCAAAAGAAACAAAATTGACGAAACGTAGAGTAACTAATGATGTTGAGGATAGCAATTATGATGTAGATATTGACGATGCAAACTATGACAATGATGCTTCCGAAGCAGATAATAAGAAAAGCAAAAAGGGTCCTTCATATGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAGTACAATATCTGCTTCACAACTGTTGAAAGATCTATGGACGGATCTTTTCCACGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCCGAGGTGCTAAAAAATCTGGTCGATCGGAGGAAAAAGGTAAAGTCATGGATAAAGAATGAAAAAAAGAAGAATGACAAAGCTGATCCTATTAGAGTTCAGCAACTGGATATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCATTGGCTGAGCTCATTACTCTACAAGGAAGAGAGATACTGCAGAGTACTGTTGATTTAGTCCAGAATACCTTGAATTTAGAGGTTATCTCTAGTACTTTTCATCTTGGAGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGAGGAAGCTAATAAAATTGCGCTAAGAGTTATTCAAGAGGTCAACAAGAAATATACATGTTTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCTGTAAAGTTGTTGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATCGTTCGTCGAGATTGGAGTGTATTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTAGTGGAGTCAATCCACAATTCTCTCATGAAGATACAAGAAGAAATGAGGAATGGAAATGTACCACTAGAAAAATATGTCATTACAAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCTTCTGGCTGCTCTGTTGGTGATACAATCCCTTACATAATTTGCTATGAGCAGGGCGGTAATTCAGGCAGTGGTGGTGGCATTGCTCAACGTGCTAGACATCCTGATGAACTTAAACGAGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCTCAACAGATCCATCCCATAGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCAGAAAGACTGGCTGATTGCTTAGGGCTCGACTCGTCCAAGTTTCATCATAAATCAAGTGAAGCTTTAAATGATGATTCTAGAAGTTCACTCTTGTGTGTTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCTTTAAATCTATTTGCTGTTTGTTGGGAAGTGAAAGGCCAACCAACGTACCCCCGGAGGATTCTGACTACAATTTCTGGCGTAAGTTGTGCTGTCCAAAATGCCCAGAAGATGTTAAAATTTCTCCTGCGATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGATGTTTGTTTTAATGTACTATAGAGGCTTACTGATGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTAGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAACGGCCGTCTGCTTAGAAAGTATACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTTGACGCTGTTTCTTGTATAGAAAAGATGGAGGCCAAATCTAGGATAACGATAGAGAAAGAGGTGGTCAAAATTAGGCCGATGATTGATCCAGCAGCTTCAACAGCACAAAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAGACTGGAGGATCTAGTCATTACAGTTTAA 4770 0.431 MVDEEPVSGRRRSRGPEATARSEALERLKARLQGGRRSDGTGPQIRLENPIYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDKSEGESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKACESIVDDVIAEFAPDETDRLRRRRAQGNSSSSSISVANNTLRVNNTYKDKPSADMMGGFSSLSENGDAESVKVIVDSDGFESGFEQKSEVVSQIEDFGRGSSENGLAPMVEADDCKIIEGMVEEKEVKSFEIEVKAGAKKEVFTLNAKVKEEEDPALFATAGWKEAMRDAGGVDVAVSKDALHNQQHSEFDLEEDGSLPFYILDAYEEFYGENRGTLYLFGKVKTGDLYQSCCVIVKNMQRCVYAVPSRPLHRTEEMTSLERDAQESRISSADLFKKLQDAVSDVKNEIAQHLVNLDVSNFSMAPVKRKYAFERFEIPAGENYVVKINYSFKDPVLPVDLKGESFCALLGTGCSALELFLIKRKIKGPSWLQVSKFSMSSSSRRVSWCKFEVTVDSPKHIRTSAPSKITSKIPPVVVAAINLKTIINEKQNINEIVSASVVCCNMVKVVFGSFFSVCLPSLWVSYALNVQITVPEYLVLSIDTPMMASEWRRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNIKSGSNILCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLGRRSKVFGSGADPGIMSCIAGRLLCDTYTCSRDLLKEVSYSLTHLAKSHLNKFRKEVAPHEVPKMFQSAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMKYMVPDKFSNYAKETKLTKRRVTNDVEDSNYDVDIDDANYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSMDGSFPRLPSSKTTGVLPEVLKNLVDRRKKVKSWIKNEKKKNDKADPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNTLNLEVISSTFHLGVIYGDTDSIMIYSGLDDIEEANKIALRVIQEVNKKYTCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSVLAKELGDFCLTQILSGGSCEDVVESIHNSLMKIQEEMRNGNVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGNSGSGGGIAQRARHPDELKREQGTWLIDIDYYLSQQIHPIVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEALNDDSRSSLLCVADDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICCLLGSERPTNVPPEDSDYNFWRKLCCPKCPEDVKISPAMIANQVKRQAEMFVLMYYRGLLMCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDAVSCIEKMEAKSRITIEKEVVKIRPMIDPAASTAQKIRDRCAFGWVRLEDLVITV 1589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00669 1589 Pfam DNA polymerase family B 864 1342 IPR006134 GO:0000166|GO:0003677
Spst2g00669 1589 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Spst2g00669 1589 Gene3D - 359 558 - -
Spst2g00669 1589 NCBIfam DNA polymerase (pol2) 656 1340 - -
Spst2g00669 1589 MobiDBLite consensus disorder prediction 1 34 - -
Spst2g00669 1589 PRINTS DNA-directed DNA-polymerase family B signature 1046 1058 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst2g00669 1589 PRINTS DNA-directed DNA-polymerase family B signature 1108 1116 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst2g00669 1589 PRINTS DNA-directed DNA-polymerase family B signature 963 976 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst2g00669 1589 MobiDBLite consensus disorder prediction 1 53 - -
Spst2g00669 1589 MobiDBLite consensus disorder prediction 103 124 - -
Spst2g00669 1589 CDD DNA_polB_alpha_exo 572 856 - -
Spst2g00669 1589 FunFam DNA polymerase 1004 1060 - -
Spst2g00669 1589 MobiDBLite consensus disorder prediction 921 946 - -
Spst2g00669 1589 Gene3D - 572 920 IPR036397 GO:0003676
Spst2g00669 1589 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 15 1587 - -
Spst2g00669 1589 Pfam DNA Polymerase alpha zinc finger 1383 1585 IPR015088 GO:0003887|GO:0006260
Spst2g00669 1589 ProSitePatterns DNA polymerase family B signature. 1110 1118 IPR017964 GO:0000166|GO:0003676
Spst2g00669 1589 Gene3D - 1186 1373 IPR042087 -
Spst2g00669 1589 FunFam DNA polymerase 627 919 - -
Spst2g00669 1589 CDD POLBc_alpha 939 1358 IPR045846 GO:0003887|GO:1902975
Spst2g00669 1589 Pfam DNA polymerase family B, exonuclease domain 389 798 IPR006133 -
Spst2g00669 1589 Coils Coil 1122 1142 - -
Spst2g00669 1589 Gene3D Helix hairpin bin 1008 1059 - -
Spst2g00669 1589 SUPERFAMILY Ribonuclease H-like 353 893 IPR012337 -
Spst2g00669 1589 FunFam DNA polymerase 399 525 - -
Spst2g00669 1589 FunFam DNA polymerase 1186 1372 - -
Spst2g00669 1589 SMART polmehr3 572 1122 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst2g00669 1589 Gene3D DNA Polymerase alpha, zinc finger 1382 1574 IPR038256 -
Spst2g00669 1589 Gene3D - 399 525 - -
Spst2g00669 1589 Gene3D Palm domain of DNA polymerase 932 1171 IPR023211 -
Spst2g00669 1589 SUPERFAMILY DNA/RNA polymerases 937 1358 IPR043502 -
Spst2g00669 1589 MobiDBLite consensus disorder prediction 74 136 - -
Spst2g00669 1589 FunFam DNA polymerase 1381 1575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00669 Spst-Chr2 5546094 5557832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00669 3 1587 Core DNA Replication Machinery Family AT5G67100 59.091 0.0 1795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00669 K02320 - gmx:100798779 2632.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00669 2 5546094 5557832 Spst2g00669 2 5546094 5557832 ECH