Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00637 ATGGACCGGATCAAAGGCCCATGGAGTCCCGAGGAGGACGAAGCTCTGCAGAAGCTCGTCGTCAAACACGGGCCCAGGAACTGGTCCCTCATTAGCAAGTCCATCCCTGGTCGCTCCGGCAAGTCCTGCAGGCTACGCTGGTGCAATCAGCTCTCCCCCCAGGTGGAGCACCGGGCCTTTACGCCCGAAGAGGATGATACCATAATTCGGGCCCATGCCCGCTTCGGTAACAAATGGGCTACCATAGCCCGCTTGCTCCAGGGCAGAACCGACAACGCAATCAAGAACCACTGGAACTCTACGTTGAAGCGCAAGTGCGCTTCGATCATGATAGACGACCACGCTCCACCGCTTAAGAGATCCGTTAGTGCCGGCGCGGCCATCCCCGTCTCCACCGGACTCTACATGAACCCTCCCACACCTGGTAGCCCCTCCGGATCCGATGTGAGCGAGTCCAGCGTGCCGGTTGCATCCCCCTCACACGTGTTTCGACCCGTGCCTAGGACCGGCGCGGTTCTACCGCCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCCCTTTCCCTATCCCTCCCCGGCGTCGATTCTTCCGAAGTCTCCAATCGGATATCTGAGTCAACCCATCCCGCACCACCGCCACAGCCGTCGAACACCATCCCTGTCCTCCCATTAATGTCTGCTCCGGTGGCGGTGGTGCAGCAGTTGAAGCCACCGGGGTTGGGGGCTTTCAACTTAAGCGCAGAGTTTTTGTCGGTGATGCAGGAAATGATTAAGAAGGAGGTGAGGAGTTATATGGAGCGCCAGAATCCGAATGGGATGTGTTTTCAGGCTGCAGATGATGGATTTAGGAATGCTTCCGTCAAACGAATGGGGATTAGCAGGATCGATTCGTAA 900 0.5744 MDRIKGPWSPEEDEALQKLVVKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLQGRTDNAIKNHWNSTLKRKCASIMIDDHAPPLKRSVSAGAAIPVSTGLYMNPPTPGSPSGSDVSESSVPVASPSHVFRPVPRTGAVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRISESTHPAPPPQPSNTIPVLPLMSAPVAVVQQLKPPGLGAFNLSAEFLSVMQEMIKKEVRSYMERQNPNGMCFQAADDGFRNASVKRMGISRIDS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00637 299 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Spst2g00637 299 Gene3D - 58 120 - -
Spst2g00637 299 CDD SANT 7 49 IPR001005 -
Spst2g00637 299 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Spst2g00637 299 MobiDBLite consensus disorder prediction 135 219 - -
Spst2g00637 299 PANTHER MYB PROTEIN-RELATED 5 198 - -
Spst2g00637 299 FunFam MYB transcription factor 5 56 - -
Spst2g00637 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Spst2g00637 299 CDD SANT 59 102 IPR001005 -
Spst2g00637 299 MobiDBLite consensus disorder prediction 174 209 - -
Spst2g00637 299 Gene3D - 4 56 - -
Spst2g00637 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Spst2g00637 299 MobiDBLite consensus disorder prediction 136 157 - -
Spst2g00637 299 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Spst2g00637 299 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Spst2g00637 299 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Spst2g00637 299 FunFam Transcription factor MYB44 59 105 - -
Spst2g00637 299 SMART sant 56 104 IPR001005 -
Spst2g00637 299 SMART sant 4 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00637 Spst-Chr2 5260184 5261083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00637 2 298 MYB Transcription Factor Family AT5G67300 58.730 6.91e-104 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g00637 Myb_DNA-binding 8.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00637 K09422 - gmx:780556 473.396