Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00617 ATGGTTTATCTCGCCGGTGCAGGATACATCACAGTCGTCGGAATGAATAACCGGAGGCCAAAATTCTTTACATCAGTTATACCAAACAGCACCATTTTAACGCTCTACGACATCGTATCACTCTGTCGGGGAGAACATGGCTTCAGTAGCGCTTCCGAATCAGCTTGGACAGATTTACCCATAGAGAACGCCTACGAGCTGTTAGGAGTGACCGAGACCAGTTCTTTTGCCGAGATTAAAACGTCTTTTCGCAAATTGGCCAAAGAAACTCACCCGGACCTCGCGGAGGCAAGCAACGGTTCCAGTGCGTCTCGACGATTTGTGCAAATTCTGGCTGCCTACGAGATTCTTTCAGATTCTAAAAAGAGAGCCCATTATGACATGTACCTGTTGTCGCAGAAAAAGCTTATGCAAAAGCATTCTAATCAGGGTTCTAAATTGTATATTTACAAATCAGAAGGTACCACGTTCAAGGTGATGGAAGTTGTTGAATGGTTAAAATGGTACAGGTTAACTATAAATAATATTTTGGCAGAAAAGAAGGTGGTAGATGGAACAGGCTATTTCGATGTACTTGAGAGAGATTTTTATTCAGCTATTCATGCAGCATACTATGGTCCTGAAATTGACTCTATGCCGATGGAACTTCTTCCTGACTGCTTTGAAGCTGAGGAAAGGTCCTCTTATGATACTCCTGAGGTTTTGCACTTAGTTTCGGGTCGTGATCTTTTTGGGATGGTTTGCCTAGCCAACAAGGTTCCAGAGATATCAACTACTAACAACGAGAAGTTAACATCTTTTAGATCCTTTCATTCTGACCTGAGTCAATCTATAACAAATATGAATGTCCACAGGAATGCAGAAAGATCAGATGATTTTGAAACCTATGAAGGTCTCAGCTCTAAAACTTCAAGTATTGTATCAGATGCATATAGACATCTAGAATTGCACATCGCTGGAAGAGTGGTTGCTACAGCATCTAGGGCCCTTCCTAGATGCGGTTCTGATGTAATGCAGACAGAAGATTCTGAAGATCATATTCATGTGTTCCTTAACTTATATGAAGATCCCAAACATATCAGCAGTGGTTTTTGGAAAGATTACCAAGCAAATGGTGCAGTTGGAAGTAGAATTCATTTGGGAACCATATCTGGACTTGGGAGCAGTCCAGATGAAGGTTGTTGTTATGTTTACAATGATAAGGGTACAAAGACCCATGCGATTATGAAGCACAGAACATTGATGGTGAAGCATATGCATTGGTATGAAGCGGGTGAGAAAGTTTCAGTTTGCGAGTGTAGATGCAGTAGAGCACGTTTACCCCCAAGCAAATTTTGGCTATTTGAGCCTCGCTGTGGCTTACATGATATAGGGGGCTGGTATGTTGAAACATATGGCAAAGATAAGAACGGTCGTACAAAGCCATCACAAAGGTTCTGGGGTGGTTTGGACTATAACATGCAAGCTGACGGAAGACTTCATCCGGCAATGTATCTGTTTGCTCTTGCATATCGGACACTTGATCTTGAATACGTCAAAGCAAGCAAGAAATCATTTAGGAATGTTGTTGGAGCACATACGTTTAGAATACTTCATTGGTGCAAGAAACTTGTTCGATAG 1620 0.4179 MVYLAGAGYITVVGMNNRRPKFFTSVIPNSTILTLYDIVSLCRGEHGFSSASESAWTDLPIENAYELLGVTETSSFAEIKTSFRKLAKETHPDLAEASNGSSASRRFVQILAAYEILSDSKKRAHYDMYLLSQKKLMQKHSNQGSKLYIYKSEGTTFKVMEVVEWLKWYRLTINNILAEKKVVDGTGYFDVLERDFYSAIHAAYYGPEIDSMPMELLPDCFEAEERSSYDTPEVLHLVSGRDLFGMVCLANKVPEISTTNNEKLTSFRSFHSDLSQSITNMNVHRNAERSDDFETYEGLSSKTSSIVSDAYRHLELHIAGRVVATASRALPRCGSDVMQTEDSEDHIHVFLNLYEDPKHISSGFWKDYQANGAVGSRIHLGTISGLGSSPDEGCCYVYNDKGTKTHAIMKHRTLMVKHMHWYEAGEKVSVCECRCSRARLPPSKFWLFEPRCGLHDIGGWYVETYGKDKNGRTKPSQRFWGGLDYNMQADGRLHPAMYLFALAYRTLDLEYVKASKKSFRNVVGAHTFRILHWCKKLVR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00617 539 Pfam DnaJ domain 63 127 IPR001623 -
Spst2g00617 539 PRINTS DnaJ domain signature 102 122 IPR001623 -
Spst2g00617 539 PRINTS DnaJ domain signature 65 83 IPR001623 -
Spst2g00617 539 PRINTS DnaJ domain signature 83 98 IPR001623 -
Spst2g00617 539 Gene3D DnaJ domain 56 152 IPR036869 -
Spst2g00617 539 SMART dnaj_3 62 122 IPR001623 -
Spst2g00617 539 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 41 538 - -
Spst2g00617 539 SUPERFAMILY Chaperone J-domain 61 133 IPR036869 -
Spst2g00617 539 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Spst2g00617 539 ProSiteProfiles dnaJ domain profile. 63 130 IPR001623 -
Spst2g00617 539 CDD DnaJ 63 119 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00617 Spst-Chr2 5096576 5101156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00617 65 129 C2H2 Transcription Factor Family AT1G74250 42.647 4.11e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00617 - - vra:106777675 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00617 2 5096576 5101156 Spst2g00617 2 5096576 5101156 ECH