Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00598 ATGCCGCCATCTATGCCTCGATCAATAACAACCGGTTGTTCTTGTGAGTGTTTGGCATCCAACAATTTCAAACCAAGAAGACAAAATAACGTTATTTCTTCAACAACAAAAGATTTGTGGGAGCGTGTTTTTTATCAAGGTTATAAAGCAGATGTTTGCATTAATACCGATAACGGCGGCGTTGTTTACGCTCATTCTAACATTCTTGCCATGGCTTCTCCTGTATTGAGAGGGATGTTAAAACAAGCAAATCGAAGTGGTCGATGGCGAACAATCTCAATCAATGGGGTCCCACATGTAGCAGTTCAAGTTTTTATTCGACATTTGTACACTTATAGTTATGAGAAAGAAGAAATGGATGAATTGGTACTACATTTGTTGGTGTTGTCACATGCATTCATGGTTCCTCACTTGAAGTGTGAATGTGAACGAAAGTTAGAATTGGGTTTAGTCACCATAGATAACTTGGTCGATGTATTTCAACTAGCCTTGTTGTGTGATGCTCCAAGACTTAGTCTCATCTGCCATCGCAAGATACTCAAAAACTTCAAAGTTGTGTCAGAGTCAGAAGGATGGAAAGCAATGAAGTCAAGTCACCCGGCTCTAGAAAAGGAGATTTTAGAGTCAATGATCGATGAAGAGAATATTAAAAAGGAAAGGACGAGAAAAATGAAAGAGAGAAAGGTATATCTCCAACTTTATGAGGCTATGGAAGCGCTTGTTCACATATGTAAAGATGGTTGTCGAACTATTGGTCCTCATGATAAAGATCTTCAAGCAAACCAACCATGCAAGTATTCAGCATGCAACGGGTTAGAGTTGCTTGTTCGTCATTTTGCTGGATGTAAGTTGAGAGTTCCTGGAGGGTGTGTTCATTGTAAGAGGATGTGGCAATTATTGGAGCTACACTCTCGATTATGTGCTACTCCAGATGATTGCAGAGTTCCCTTGTGCAGGAACTTTAAGGAACGAATATCAAAACAAAGCAAGAAAGATGAAATTAGATGGAAAATATTGGTGGAAAAGATCTTGAGAACAAGAGGAATTGGGATAGCATCGTGTTTTCTGCAGCAATGA 1077 0.3937 MPPSMPRSITTGCSCECLASNNFKPRRQNNVISSTTKDLWERVFYQGYKADVCINTDNGGVVYAHSNILAMASPVLRGMLKQANRSGRWRTISINGVPHVAVQVFIRHLYTYSYEKEEMDELVLHLLVLSHAFMVPHLKCECERKLELGLVTIDNLVDVFQLALLCDAPRLSLICHRKILKNFKVVSESEGWKAMKSSHPALEKEILESMIDEENIKKERTRKMKERKVYLQLYEAMEALVHICKDGCRTIGPHDKDLQANQPCKYSACNGLELLVRHFAGCKLRVPGGCVHCKRMWQLLELHSRLCATPDDCRVPLCRNFKERISKQSKKDEIRWKILVEKILRTRGIGIASCFLQQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00598 358 Pfam TAZ zinc finger 234 318 IPR000197 -
Spst2g00598 358 Gene3D TAZ domain 225 346 IPR035898 -
Spst2g00598 358 FunFam BTB/POZ and TAZ domain-containing protein 2 152 222 - -
Spst2g00598 358 SUPERFAMILY TAZ domain 227 327 IPR035898 -
Spst2g00598 358 FunFam BTB/POZ and TAZ domain-containing protein 2 224 348 - -
Spst2g00598 358 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 19 352 IPR044513 -
Spst2g00598 358 SUPERFAMILY POZ domain 28 146 IPR011333 -
Spst2g00598 358 Pfam BTB/POZ domain 48 146 IPR000210 GO:0005515
Spst2g00598 358 CDD BACK 152 209 - -
Spst2g00598 358 SMART TAZ_2 227 319 IPR000197 -
Spst2g00598 358 SMART BTB_4 50 150 IPR000210 GO:0005515
Spst2g00598 358 Gene3D - 152 224 - -
Spst2g00598 358 Gene3D Potassium Channel Kv1.1; Chain A 20 151 IPR011333 -
Spst2g00598 358 ProSiteProfiles BTB domain profile. 50 118 IPR000210 GO:0005515
Spst2g00598 358 ProSiteProfiles Zinc finger TAZ-type profile. 224 321 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00598 Spst-Chr2 4917074 4918621 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Spst2g00598 BTB 1e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00598 - - var:108334777 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00598 2 4917074 4918621 Spst2g00598 2 4917074 4918621 ECH