Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00578 ATGGAACCTGACGGGATTGGCGAACTCAAGCTACCACTGTTGCATACATCGGAAGCTGCTACCGCCCCTGTTAGGACCGTCACGTTCCAACTGAGCGACGTCAAGTGTTCTTCATGCGTGAATTCTGTCGAGGCCGTCGTCGGGAGCCTTAACGGCGTCAAAAGCGTCGCCGTTTCGCCGCTTGACGGTCGCGCCGCCATCAAGTTTGACCCTAAGTTGGTTACTGTGAAACAAATAAAAGGGAAAACATCGGATGCTTTAGGAAAGCTAACTCAACTTGTTCCTGATAAAGCTTTTTTAGTAGAAATTGATACCGAAGGAAATATAATCACAGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCTGTTGATGGTATTGTTATAAAAGGGCAAAGCTATGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAAGCCCAGGAGACAAGGTTATCAGTGGAACCATCAATGAAAATGGATGCTTACTGGTAAATGCCACACATGTTGGATCAGACACTACACTTTCTCAAATAGTTCAACTAGTTGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCTGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGTGGCGCTAATAACTTGGCTTGGATGGTTCATTCCTGGGGAAGCTGGTATTTTCCCTGAACATTGGATACCAACAGCAATGGATGCATTTGAGCTAGCTTTGCAGTTTGCTATTTCTGTGTTGGTTGTTGCTTGCCCATGTGCTCTGGGACTTGCAACACCAACAGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTGCTCATCAAGGGCGGAAATGCGCTGGAAAAGGCACACAAGGTAAAAGTTGTTGTGTTTGATAAGACTGGAACACTAACAGTTGGGAAGCCAGAGGTAGTTAGTGCAGTTCTGTTTTCTGAATTTTCTATGGAGGAGTTATGTGACATGACAATTGCTGTTGAGGCAAGTAGTGAGCACCCGATAGCAAAAGCTGTTGTGGTACATGCGAAAAGGCTGCGGCAGAAATTTGGTTCTTCCACAGATGAAGTCCCGGATGTGAATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGATAGAAAGGTTGTAGTTGGAAACAAGAGACTCATGCATGCTTGTAATATTCCAGTAGGTTCTAAGGTTGAGAAGTACATATCTGAAAATGAAAATCTAGCTAGAACTTGCATTTTAGTTTCAATTGATGGAAAGATTGCTGGAGCATTCTGCGTAACTGATCCTGTAAAGCCAGAGGCTAGACGTGTTGTATCTTTTCTCCACTCCATGGGCATTTCAAGTATCATTGTGACTGGTGATAACCGTGCTACCGCAATTGCTATAGCAAATGAAGTAGGTATTGATGAGGTTTTTGCTGAGACAGATCCTGTTGGCAAAGCTAACAAGGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCAATGGTAGGTGATGGAATAAATGACTCACCAGCCCTGGTTGCTGCTGATGTTGGCATGGCAATTGGTGCTGGAACTGACATTGCTATAGAAGCAGCTGACATAGTTCTGGTCAAAAGCAGTTTGGAAGATGTGATCACAGCCATAGATCTATCTAGAAAGACCATGTCACGCATCCGACTGAACTACATCTGGGCTCTTGGTTACAACATTCTAGGCATGCTAATTGCTGCAGGAGTCTTGTACCCTTTTGCTGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCGTCTCTTAGTGTGGTTTCATCCTCTCTCTTACTGCAGTTCTATAAAAAACCTCTTCATATAGAATCCTTTTGA 1923 0.4389 MEPDGIGELKLPLLHTSEAATAPVRTVTFQLSDVKCSSCVNSVEAVVGSLNGVKSVAVSPLDGRAAIKFDPKLVTVKQIKGKTSDALGKLTQLVPDKAFLVEIDTEGNIITETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVNATHVGSDTTLSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVVALITWLGWFIPGEAGIFPEHWIPTAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGNALEKAHKVKVVVFDKTGTLTVGKPEVVSAVLFSEFSMEELCDMTIAVEASSEHPIAKAVVVHAKRLRQKFGSSTDEVPDVNDFEVHMGAGVSGKVGDRKVVVGNKRLMHACNIPVGSKVEKYISENENLARTCILVSIDGKIAGAFCVTDPVKPEARRVVSFLHSMGISSIIVTGDNRATAIAIANEVGIDEVFAETDPVGKANKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMLIAAGVLYPFAGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIESF 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00578 640 SUPERFAMILY HAD-like 310 625 IPR036412 -
Spst2g00578 640 SUPERFAMILY Calcium ATPase, transduction domain A 112 198 IPR008250 -
Spst2g00578 640 ProSitePatterns Heavy-metal-associated domain. 31 59 IPR017969 GO:0046872
Spst2g00578 640 Gene3D - 85 202 - -
Spst2g00578 640 Gene3D - 303 569 IPR023214 -
Spst2g00578 640 CDD HMA 28 86 IPR006121 GO:0046872
Spst2g00578 640 FunFam Copper-transporting ATPase 1, putative 80 202 - -
Spst2g00578 640 Pfam E1-E2 ATPase 111 290 - -
Spst2g00578 640 ProSitePatterns E1-E2 ATPases phosphorylation site. 314 320 IPR018303 -
Spst2g00578 640 Gene3D - 19 84 - -
Spst2g00578 640 NCBIfam heavy metal translocating P-type ATPase 78 628 IPR027256 GO:0006812|GO:0016020|GO:0019829
Spst2g00578 640 SUPERFAMILY HMA, heavy metal-associated domain 22 85 IPR036163 GO:0046872
Spst2g00578 640 Pfam Heavy-metal-associated domain 28 85 IPR006121 GO:0046872
Spst2g00578 640 SFLD p-type atpase 294 571 IPR044492 -
Spst2g00578 640 SUPERFAMILY Calcium ATPase, transmembrane domain M 84 590 IPR023298 -
Spst2g00578 640 PRINTS P-type cation-transporting ATPase superfamily signature 542 554 - -
Spst2g00578 640 PRINTS P-type cation-transporting ATPase superfamily signature 444 455 - -
Spst2g00578 640 PRINTS P-type cation-transporting ATPase superfamily signature 148 162 - -
Spst2g00578 640 PRINTS P-type cation-transporting ATPase superfamily signature 519 538 - -
Spst2g00578 640 PRINTS P-type cation-transporting ATPase superfamily signature 466 476 - -
Spst2g00578 640 PRINTS P-type cation-transporting ATPase superfamily signature 312 326 - -
Spst2g00578 640 FunFam Probable copper-transporting ATPase HMA5 432 576 - -
Spst2g00578 640 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 79 635 - -
Spst2g00578 640 NCBIfam HAD-IC family P-type ATPase 111 596 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst2g00578 640 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Spst2g00578 640 Pfam haloacid dehalogenase-like hydrolase 308 533 - -
Spst2g00578 640 SFLD Haloacid Dehalogenase 294 571 - -
Spst2g00578 640 CDD P-type_ATPase_Cu-like 80 615 - -
Spst2g00578 640 Gene3D - 323 452 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00578 Spst-Chr2 4708306 4710228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00578 80 638 Primary Pumps ATPases AT1G63440 62.075 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00578 K17686 - gmx:100793894 1003.82