Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00563 ATGAGGTTTCATCACTCTAATCTTTCACCTTTGGTCCCACTACTTGCACCATGCACGAGACCAACTAACACACAGAGAGAAGCTCGCATAGCAGAAATGGGACGGGCTCCTTGTTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGGCTTATATTGAGCAGCATGGCACTGGTGGCAACTGGATCGCCTTGCCCCAGAAAATAGGCCTTAAGAGATGTGGAAAGAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCAAACATCAAACATGGGGGCTTCTCAGAAGAAGAAGATAACATCATCTGTAGCCTTTATGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGATATAAAGAACTATTGGAACACTAGGCTGAAGAAGAAGCTTCTTGGAAAACAAAGGAAGGAACAACAGGCTCAAGTTCGCCGTGTCAGCAACAATCATCAGAAGCAAGATGTGAAAAGAGAATCCGAGAACTTGATAGTAGCTTCTGAAGTCATCAATCTAGTTCCCTATTGGTCTGCAGAATATTCTTCTGTGCCTATGCCAGTGACCGATGTTTCTTTTCAACACTTTGGTCTGAACAATCAAACATCTCTCAGGAACTTGATGGTTAACAAACTAGAGGGAGTTAGATTTTCCAGCGATCAGCAGCAGCAGCAACAACCATACACCAATGCATGTGAAATTCCCTCCCTGCCAGACCAGGTTTTTCCAACCATGGTAAATCATGTGGCCGTGGTGAGTAATGAAACCAATAGCGTCACTTATCAGCCAACTAATATATTTGAAGGATTTGAAAACTTCCCAAGTGATTTTTGTGAACTAGTCTGCGTGAACCCGCACCAAATGGATCGATCAATGGGGAGTTTTAACTACGGAGTGGAATCCATGGACGTCATGAGCAATGGTGGTAGCACCAACACAACTTCAACAGAAAGCACAAGTTGGGGTGACATGAGCTCTTTGGTTTACTCTCCTTTGGTTTCTGACTATGAAGGTTGCCGACAAGGAATTCCTCATGATGTTGTTGCTTTCGAAGAGTGTAAGTACTTTGGAATGCAGATGCAATAG 1134 0.44 MRFHHSNLSPLVPLLAPCTRPTNTQREARIAEMGRAPCCDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQVRRVSNNHQKQDVKRESENLIVASEVINLVPYWSAEYSSVPMPVTDVSFQHFGLNNQTSLRNLMVNKLEGVRFSSDQQQQQQPYTNACEIPSLPDQVFPTMVNHVAVVSNETNSVTYQPTNIFEGFENFPSDFCELVCVNPHQMDRSMGSFNYGVESMDVMSNGGSTNTTSTESTSWGDMSSLVYSPLVSDYEGCRQGIPHDVVAFEECKYFGMQMQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00563 377 PANTHER OS09G0431300 PROTEIN 33 318 - -
Spst2g00563 377 FunFam Transcription factor RAX3 102 179 - -
Spst2g00563 377 ProSiteProfiles Myb-like domain profile. 41 94 IPR001005 -
Spst2g00563 377 Gene3D - 102 179 - -
Spst2g00563 377 MobiDBLite consensus disorder prediction 151 175 - -
Spst2g00563 377 FunFam Transcription factor RAX3 39 100 - -
Spst2g00563 377 SUPERFAMILY Homeodomain-like 43 141 IPR009057 -
Spst2g00563 377 MobiDBLite consensus disorder prediction 152 175 - -
Spst2g00563 377 CDD SANT 48 94 IPR001005 -
Spst2g00563 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 94 IPR017930 -
Spst2g00563 377 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Spst2g00563 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Spst2g00563 377 Pfam Myb-like DNA-binding domain 46 94 IPR001005 -
Spst2g00563 377 Pfam Myb-like DNA-binding domain 101 143 IPR001005 -
Spst2g00563 377 Gene3D - 39 100 - -
Spst2g00563 377 CDD SANT 103 145 IPR001005 -
Spst2g00563 377 SMART sant 99 147 IPR001005 -
Spst2g00563 377 SMART sant 45 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00563 Spst-Chr2 4582960 4584861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00563 33 346 MYB Transcription Factor Family AT3G49690 47.006 1.25e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g00563 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00563 K09422 - gmx:106795158 598.971