Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00558 ATGGGTCTTCATCACGATGCCAATACCTCAGGCCTTCACCTCGTTCTAGGGTTATCTTTGACTGCTACCTCCACTCCATCCACCAAGCCTCTTGATGACCATCATCATCTTTGTGTTATTAAGCCTACGCCGACCAAGCCTTATTCCCCTAATGAACCATCTTTAACGTTGGGTTTGTCCGGTGAGACTTACCACCTGCTCAAGCATGTGCCCAGAAATAACAACGTGGCCAACAATAGCAAGGTTTTTTGTGAGGACCCTCTTGACATGTCTAGACAGACATCACCTCACAGCGTGGTTTCGTCTTTCTCAACTGGAAGGGTTGTCAAGAGGGAGAGAGATCTTAGCTGTGAAGAAGTTGAGATAGAGGCAGAAGAGAGGGTTTCTTCAAGAGTGAGCGACGAAGAAGAAGACGGCACCAATGCTAGGAAGAAACTCAGACTCACCAAAGAACAATCTGCACTACTAGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTAAGGCCTCGACAAGTTGAAGTGTGGTTTCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCTTGAAGAAATGCTGTGAAACGTTGACGGACGAAAACAGAAGGCTAAAAAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCGGCCACACTCACCATGTGCCCTTCTTGTGAGAGGCTCGGCGGCGTTAGCGAAAACGCTTCCAATAAAAGCCCCTTCTCCATGGCTCCCAAGCCTCACTTCTACAATCCCTTCGCCAATCCTTCCGCAGCATGTTGA 867 0.4833 MGLHHDANTSGLHLVLGLSLTATSTPSTKPLDDHHHLCVIKPTPTKPYSPNEPSLTLGLSGETYHLLKHVPRNNNVANNSKVFCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSCEEVEIEAEERVSSRVSDEEEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSENASNKSPFSMAPKPHFYNPFANPSAAC 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00558 288 SUPERFAMILY Homeodomain-like 141 207 IPR009057 -
Spst2g00558 288 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Spst2g00558 288 SMART HOX_1 141 203 IPR001356 GO:0003677
Spst2g00558 288 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Spst2g00558 288 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Spst2g00558 288 FunFam Homeobox-leucine zipper protein 18 126 204 - -
Spst2g00558 288 Coils Coil 205 235 - -
Spst2g00558 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 270 - -
Spst2g00558 288 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Spst2g00558 288 Pfam Homeobox associated leucine zipper 199 233 IPR003106 GO:0006355|GO:0043565
Spst2g00558 288 CDD homeodomain 143 200 IPR001356 GO:0003677
Spst2g00558 288 Gene3D - 147 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00558 Spst-Chr2 4551253 4552585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00558 1 288 Homeobox Transcription Factor Family AT4G37790 58.746 3.84e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst2g00558 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00558 K09338 - gmx:100784129 471.855